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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5zwm:A
    (3.4)    		 BS02 >5zwm:I (identical to 5zwo:I)
    auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauug
uguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaa
uuuuuggaau
...................<<<<<.<<<.....<<<....>>>..>>>>>
>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>..
..........
    		 ? GO:0000244 ... P33334 29794219
    2 5zwm:D
    (3.4)    		 BS01 >5zwm:I (identical to 5zwo:I)
    auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauug
uguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaa
uuuuuggaau
...................<<<<<.<<<.....<<<....>>>..>>>>>
>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>..
..........
    		 3.6.4.13 GO:0000388 ... P32639 29794219
    3 5zwm:J
    (3.4)    		 BS02 >5zwm:I (identical to 5zwo:I)
    auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauug
uguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaa
uuuuuggaau
...................<<<<<.<<<.....<<<....>>>..>>>>>
>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>..
..........
    		 ? GO:0000245 ... Q03338 29794219
    4 5zwm:L
    (3.4)    		 BS02 >5zwm:I (identical to 5zwo:I)
    auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauug
uguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaa
uuuuuggaau
...................<<<<<.<<<.....<<<....>>>..>>>>>
>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>..
..........
    		 ? GO:0000244 ... P49704 29794219
    5 5zwm:M
    (3.4)    		 BS02 >5zwm:I (identical to 5zwo:I)
    auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauug
uguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaa
uuuuuggaau
...................<<<<<.<<<.....<<<....>>>..>>>>>
>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>..
..........
    		 ? GO:0000245 ... P39990 29794219
    6 5zwm:N
    (3.4)    		 BS01 >5zwm:I (identical to 5zwo:I)
    auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauug
uguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaa
uuuuuggaau
...................<<<<<.<<<.....<<<....>>>..>>>>>
>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>..
..........
    		 ? GO:0000244 ... P19735 29794219
    7 5zwm:P
    (3.4)    		 BS01 >5zwm:I (identical to 5zwo:I)
    auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauug
uguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaa
uuuuuggaau
...................<<<<<.<<<.....<<<....>>>..>>>>>
>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>..
..........
    		 ? GO:0000243 ... P40018 29794219
    8 5zwm:Q
    (3.4)    		 BS01 >5zwm:I (identical to 5zwo:I)
    auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauug
uguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaa
uuuuuggaau
...................<<<<<.<<<.....<<<....>>>..>>>>>
>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>..
..........
    		 ? GO:0000243 ... Q02260 29794219
    9 5zwm:R
    (3.4)    		 BS01 >5zwm:I (identical to 5zwo:I)
    auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauug
uguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaa
uuuuuggaau
...................<<<<<.<<<.....<<<....>>>..>>>>>
>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>..
..........
    		 ? GO:0000243 ... Q06217 29794219
    10 5zwm:S
    (3.4)    		 BS01 >5zwm:I (identical to 5zwo:I)
    auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauug
uguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaa
uuuuuggaau
...................<<<<<.<<<.....<<<....>>>..>>>>>
>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>..
..........
    		 ? GO:0000243 ... P43321 29794219
    11 5zwm:T
    (3.4)    		 BS01 >5zwm:I (identical to 5zwo:I)
    auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauug
uguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaa
uuuuuggaau
...................<<<<<.<<<.....<<<....>>>..>>>>>
>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>..
..........
    		 ? GO:0000243 ... Q12330 29794219
    12 5zwm:U
    (3.4)    		 BS01 >5zwm:I (identical to 5zwo:I)
    auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauug
uguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaa
uuuuuggaau
...................<<<<<.<<<.....<<<....>>>..>>>>>
>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>..
..........
    		 ? GO:0000243 ... P54999 29794219
    13 5zwm:V
    (3.4)    		 BS01 >5zwm:I (identical to 5zwo:I)
    auccuuaugcacgggaaauacgcauaucagugaggauucguccgagauug
uguuuuugcugguuuaauuauaacuccucauggucagacuauguagggaa
uuuuuggaau
...................<<<<<.<<<.....<<<....>>>..>>>>>
>>>.....................<<<<<<<<<<<.>>>>>>>.>>>>..
..........
    		 ? GO:0000243 ... P40204 29794219
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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