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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 3qwc:H
    (1.75)
    BS02 >3qwc:I (identical to 5af9:I, 5ahg:I, 4ayv:D, 4ayy:D, 4az2:D, 1c1u:I, 1c1v:I, 1c1w:I, 3c1k:B, 3c27:H, 1c5o:I, 1doj:B, 1dwe:I, 4e7r:I, 4e7r:J, 6fjt:I, 6gbw:I, 1ghv:I, 1ghw:I, 1ghx:I, 1ghy:I, 1gj4:I, 1gj5:I, 1hdt:P, 6hsx:I, 6i51:I, 5jfd:I, 5lce:I, 3ldx:I, 5lpd:I, 5mjt:D, 5mls:D, 5mm6:I, 1mu6:C, 1mu8:C, 1mue:C, 1no9:I, 1o2g:I, 1o5g:I, 1qbv:E, 3qto:I, 3qx5:I, 2r2m:H, 3rlw:I, 3rly:I, 3rm0:I, 3rm2:I, 3rml:I, 3rmm:I, 3rmn:I, 3rmo:I, 6rot:A, 3sha:I, 3si3:I, 3si4:I, 3sv2:I, 1t4u:I, 1t4v:I, 3t5f:I, 6t52:I, 6t53:I, 6t55:I, 6t57:I, 6t89:I, 6t8a:I, 6tdt:I, 1tmu:J, 3tu7:I, 3u98:I, 3u9a:I, 4udw:I, 4ue7:I, 4ufe:I, 4uff:I, 4ufg:I, 3uwj:I, 6y02:C, 6y9h:I, 6yb6:I, 4yes:H, 6yhg:I, 6yhj:I, 6ymp:I, 6yqv:I)
    DFEEIPEEYLQ
    3.4.21.5 GO:0004252 ... P00734 22366545

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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