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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7w9v:A
    (3.95)    		 BS01 >7w9v:I (identical to 7c0m:I, 7c0m:i, 7d1z:I, 8g6q:I, 8g6s:I, 8jlb:I, 8jld:I, 5kgf:I, 3lz0:I, 3lz1:J, 5mlu:J, 6nn6:I, 8of4:I, 7oh9:I, 7ohb:I, 7ohc:I, 6se0:I, 6se6:I, 6see:I, 6sef:I, 6seg:I, 6t9l:I, 7wlr:I, 8ybj:I, 7yqk:I, 6z6p:I, 6zhx:I, 4zux:I, 4zux:S)
    atcagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcgat
    		 ? GO:0000786 ... P68431 35754730
    2 7w9v:B
    (3.95)    		 BS01 >7w9v:I (identical to 7c0m:I, 7c0m:i, 7d1z:I, 8g6q:I, 8g6s:I, 8jlb:I, 8jld:I, 5kgf:I, 3lz0:I, 3lz1:J, 5mlu:J, 6nn6:I, 8of4:I, 7oh9:I, 7ohb:I, 7ohc:I, 6se0:I, 6se6:I, 6see:I, 6sef:I, 6seg:I, 6t9l:I, 7wlr:I, 8ybj:I, 7yqk:I, 6z6p:I, 6zhx:I, 4zux:I, 4zux:S)
    atcagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcgat
    		 ? GO:0000781 ... P62805 35754730
    3 7w9v:C
    (3.95)    		 BS01 >7w9v:I (identical to 7c0m:I, 7c0m:i, 7d1z:I, 8g6q:I, 8g6s:I, 8jlb:I, 8jld:I, 5kgf:I, 3lz0:I, 3lz1:J, 5mlu:J, 6nn6:I, 8of4:I, 7oh9:I, 7ohb:I, 7ohc:I, 6se0:I, 6se6:I, 6see:I, 6sef:I, 6seg:I, 6t9l:I, 7wlr:I, 8ybj:I, 7yqk:I, 6z6p:I, 6zhx:I, 4zux:I, 4zux:S)
    atcagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcgat
    		 ? GO:0000786 ... P04908 35754730
    4 7w9v:D
    (3.95)    		 BS01 >7w9v:I (identical to 7c0m:I, 7c0m:i, 7d1z:I, 8g6q:I, 8g6s:I, 8jlb:I, 8jld:I, 5kgf:I, 3lz0:I, 3lz1:J, 5mlu:J, 6nn6:I, 8of4:I, 7oh9:I, 7ohb:I, 7ohc:I, 6se0:I, 6se6:I, 6see:I, 6sef:I, 6seg:I, 6t9l:I, 7wlr:I, 8ybj:I, 7yqk:I, 6z6p:I, 6zhx:I, 4zux:I, 4zux:S)
    atcagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcgat
    		 ? GO:0000786 ... P06899 35754730
    5 7w9v:E
    (3.95)    		 BS01 >7w9v:I (identical to 7c0m:I, 7c0m:i, 7d1z:I, 8g6q:I, 8g6s:I, 8jlb:I, 8jld:I, 5kgf:I, 3lz0:I, 3lz1:J, 5mlu:J, 6nn6:I, 8of4:I, 7oh9:I, 7ohb:I, 7ohc:I, 6se0:I, 6se6:I, 6see:I, 6sef:I, 6seg:I, 6t9l:I, 7wlr:I, 8ybj:I, 7yqk:I, 6z6p:I, 6zhx:I, 4zux:I, 4zux:S)
    atcagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcgat
    		 ? GO:0000786 ... P68431 35754730
    6 7w9v:F
    (3.95)    		 BS01 >7w9v:I (identical to 7c0m:I, 7c0m:i, 7d1z:I, 8g6q:I, 8g6s:I, 8jlb:I, 8jld:I, 5kgf:I, 3lz0:I, 3lz1:J, 5mlu:J, 6nn6:I, 8of4:I, 7oh9:I, 7ohb:I, 7ohc:I, 6se0:I, 6se6:I, 6see:I, 6sef:I, 6seg:I, 6t9l:I, 7wlr:I, 8ybj:I, 7yqk:I, 6z6p:I, 6zhx:I, 4zux:I, 4zux:S)
    atcagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcgat
    		 ? GO:0000781 ... P62805 35754730
    7 7w9v:G
    (3.95)    		 BS01 >7w9v:I (identical to 7c0m:I, 7c0m:i, 7d1z:I, 8g6q:I, 8g6s:I, 8jlb:I, 8jld:I, 5kgf:I, 3lz0:I, 3lz1:J, 5mlu:J, 6nn6:I, 8of4:I, 7oh9:I, 7ohb:I, 7ohc:I, 6se0:I, 6se6:I, 6see:I, 6sef:I, 6seg:I, 6t9l:I, 7wlr:I, 8ybj:I, 7yqk:I, 6z6p:I, 6zhx:I, 4zux:I, 4zux:S)
    atcagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcgat
    		 ? GO:0000786 ... P04908 35754730
    8 7w9v:H
    (3.95)    		 BS01 >7w9v:I (identical to 7c0m:I, 7c0m:i, 7d1z:I, 8g6q:I, 8g6s:I, 8jlb:I, 8jld:I, 5kgf:I, 3lz0:I, 3lz1:J, 5mlu:J, 6nn6:I, 8of4:I, 7oh9:I, 7ohb:I, 7ohc:I, 6se0:I, 6se6:I, 6see:I, 6sef:I, 6seg:I, 6t9l:I, 7wlr:I, 8ybj:I, 7yqk:I, 6z6p:I, 6zhx:I, 4zux:I, 4zux:S)
    atcagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggg
gattactccctagtctccaggcacgtgtcagatatatacatcgat
    		 ? GO:0000786 ... P06899 35754730
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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