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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5omx:A
    (2.32)    		 BS01 >5omx:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 2pyo:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P84233 29113904
    2 5omx:B
    (2.32)    		 BS01 >5omx:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 2pyo:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P62799 29113904
    3 5omx:C
    (2.32)    		 BS01 >5omx:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 2pyo:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P06897 29113904
    4 5omx:D
    (2.32)    		 BS01 >5omx:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 2pyo:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P02281 29113904
    5 5omx:E
    (2.32)    		 BS01 >5omx:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 2pyo:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P84233 29113904
    6 5omx:F
    (2.32)    		 BS01 >5omx:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 2pyo:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P62799 29113904
    7 5omx:G
    (2.32)    		 BS01 >5omx:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 2pyo:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P06897 29113904
    8 5omx:H
    (2.32)    		 BS01 >5omx:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 2pyo:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P02281 29113904
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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