Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5e5a:A
    (2.809)    		 BS01 >5e5a:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P84233 26812545
    2 5e5a:B
    (2.809)    		 BS01 >5e5a:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P62799 26812545
    3 5e5a:C
    (2.809)    		 BS01 >5e5a:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P06897 26812545
    4 5e5a:D
    (2.809)    		 BS01 >5e5a:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P02281 26812545
    5 5e5a:E
    (2.809)    		 BS01 >5e5a:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P84233 26812545
    6 5e5a:F
    (2.809)    		 BS01 >5e5a:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P62799 26812545
    7 5e5a:G
    (2.809)    		 BS01 >5e5a:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P06897 26812545
    8 5e5a:H
    (2.809)    		 BS01 >5e5a:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P02281 26812545
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218