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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 2pyo:A
    (2.43)    		 BS01 >2pyo:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 5omx:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000785 ... P02299 17957772
    2 2pyo:B
    (2.43)    		 BS01 >2pyo:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 5omx:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000228 ... P84040 17957772
    3 2pyo:C
    (2.43)    		 BS01 >2pyo:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 5omx:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P84051 17957772
    4 2pyo:D
    (2.43)    		 BS01 >2pyo:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 5omx:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P02283 17957772
    5 2pyo:E
    (2.43)    		 BS01 >2pyo:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 5omx:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000785 ... P02299 17957772
    6 2pyo:F
    (2.43)    		 BS01 >2pyo:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 5omx:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000228 ... P84040 17957772
    7 2pyo:G
    (2.43)    		 BS01 >2pyo:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 5omx:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P84051 17957772
    8 2pyo:H
    (2.43)    		 BS01 >2pyo:I (identical to 5av5:I, 5av6:I, 5av8:I, 5av9:I, 5avb:I, 5avc:I, 3b6f:I, 3b6g:I, 8eue:I, 8euj:I, 1kx5:I, 3lja:I, 3mgp:I, 3mgq:I, 3mgr:I, 3mgs:I, 5omx:I, 8w9d:i, 8w9e:i, 8w9f:i, 4xzq:I, 4ys3:I, 4z66:I)
    atcaatatccacctgcagatactaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagctggaatccagctgaacatgccttttgatgga
gcagtttccaaatacacttttggtagtatctgcaggtggatattgat
    		 ? GO:0000786 ... P02283 17957772
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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