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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 1p3m:A
    (2.9)    		 BS01 >1p3m:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P84233 14739929
    2 1p3m:B
    (2.9)    		 BS01 >1p3m:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P62799 14739929
    3 1p3m:C
    (2.9)    		 BS01 >1p3m:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P06897 14739929
    4 1p3m:D
    (2.9)    		 BS01 >1p3m:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P02281 14739929
    5 1p3m:E
    (2.9)    		 BS01 >1p3m:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P84233 14739929
    6 1p3m:F
    (2.9)    		 BS01 >1p3m:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P62799 14739929
    7 1p3m:G
    (2.9)    		 BS01 >1p3m:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P06897 14739929
    8 1p3m:H
    (2.9)    		 BS01 >1p3m:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P02281 14739929
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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