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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7umh:G (2.6) BS43 CL0 1.97.1.12 GO:0000287 ... P29255 37532717
    2 7umh:G (2.6) BS44 CLA 1.97.1.12 GO:0000287 ... P29255 37532717
    3 7umh:G (2.6) BS45 CLA 1.97.1.12 GO:0000287 ... P29255 37532717
    4 7umh:G (2.6) BS46 CLA 1.97.1.12 GO:0000287 ... P29255 37532717
    5 7umh:G (2.6) BS47 CLA 1.97.1.12 GO:0000287 ... P29255 37532717
    6 7umh:G (2.6) BS48 CLA 1.97.1.12 GO:0000287 ... P29255 37532717
    7 7umh:G (2.6) BS49 SF4 1.97.1.12 GO:0000287 ... P29255 37532717
    8 7umh:H (2.6) BS01 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    9 7umh:H (2.6) BS02 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    10 7umh:H (2.6) BS03 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    11 7umh:H (2.6) BS04 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    12 7umh:H (2.6) BS05 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    13 7umh:H (2.6) BS06 CL0 1.97.1.12 GO:0000287 ... P29254 37532717
    14 7umh:H (2.6) BS07 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    15 7umh:H (2.6) BS08 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    16 7umh:H (2.6) BS09 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    17 7umh:H (2.6) BS10 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    18 7umh:H (2.6) BS11 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    19 7umh:H (2.6) BS12 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    20 7umh:H (2.6) BS13 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    21 7umh:H (2.6) BS14 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    22 7umh:H (2.6) BS15 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    23 7umh:H (2.6) BS16 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    24 7umh:H (2.6) BS17 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    25 7umh:H (2.6) BS18 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    26 7umh:H (2.6) BS19 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    27 7umh:H (2.6) BS20 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    28 7umh:H (2.6) BS21 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    29 7umh:H (2.6) BS22 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    30 7umh:H (2.6) BS23 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    31 7umh:H (2.6) BS24 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    32 7umh:H (2.6) BS25 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33 7umh:H (2.6) BS26 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    34 7umh:H (2.6) BS27 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    35 7umh:H (2.6) BS28 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    36 7umh:H (2.6) BS29 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    37 7umh:H (2.6) BS30 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    38 7umh:H (2.6) BS31 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    39 7umh:H (2.6) BS32 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    40 7umh:H (2.6) BS33 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    41 7umh:H (2.6) BS34 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    42 7umh:H (2.6) BS35 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    43 7umh:H (2.6) BS36 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    44 7umh:H (2.6) BS37 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    45 7umh:H (2.6) BS38 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    46 7umh:H (2.6) BS39 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    47 7umh:H (2.6) BS40 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    48 7umh:H (2.6) BS41 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    49 7umh:H (2.6) BS42 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    50 7umh:H (2.6) BS43 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    51 7umh:H (2.6) BS44 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    52 7umh:H (2.6) BS45 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    53 7umh:H (2.6) BS46 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    54 7umh:H (2.6) BS47 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    55 7umh:H (2.6) BS48 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    56 7umh:H (2.6) BS49 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    57 7umh:H (2.6) BS50 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    58 7umh:H (2.6) BS51 PQN 1.97.1.12 GO:0000287 ... P29254 37532717
    59 7umh:H (2.6) BS52 SF4 1.97.1.12 GO:0000287 ... P29254 37532717
    60 7umh:Q (2.6) BS03 CLA ? GO:0009522 ... P29256 37532717
    61 7umh:Q (2.6) BS04 CLA ? GO:0009522 ... P29256 37532717
    62 7umh:S (2.6) BS02 CLA ? GO:0009522 ... Q55329 37532717
    63 7umh:S (2.6) BS03 CLA ? GO:0009522 ... Q55329 37532717
    64 7umh:S (2.6) BS04 CLA ? GO:0009522 ... Q55329 37532717
    65 7umh:T (2.6) BS01 CLA ? GO:0009522 ... P72712 37532717
    66 7umh:T (2.6) BS02 CLA ? GO:0009522 ... P72712 37532717
    67 7umh:U (2.6) BS03 CLA ? GO:0005886 ... P37277 37532717
    68 7umh:U (2.6) BS04 CLA ? GO:0005886 ... P37277 37532717
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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