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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6nwa:B (3.48) BS47 CLA 1.97.1.12 GO:0000287 ... P29255 31133699
    2 6nwa:G (3.48) BS02 CLA 1.97.1.12 GO:0000287 ... P29255 31133699
    3 6nwa:G (3.48) BS03 CLA 1.97.1.12 GO:0000287 ... P29255 31133699
    4 6nwa:G (3.48) BS04 CLA 1.97.1.12 GO:0000287 ... P29255 31133699
    5 6nwa:G (3.48) BS05 CLA 1.97.1.12 GO:0000287 ... P29255 31133699
    6 6nwa:G (3.48) BS06 CLA 1.97.1.12 GO:0000287 ... P29255 31133699
    7 6nwa:G (3.48) BS07 SF4 1.97.1.12 GO:0000287 ... P29255 31133699
    8 6nwa:H (3.48) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 31133699
    9 6nwa:H (3.48) BS02 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    10 6nwa:H (3.48) BS03 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    11 6nwa:H (3.48) BS04 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    12 6nwa:H (3.48) BS05 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    13 6nwa:H (3.48) BS06 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    14 6nwa:H (3.48) BS07 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    15 6nwa:H (3.48) BS08 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    16 6nwa:H (3.48) BS09 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17 6nwa:H (3.48) BS10 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    18 6nwa:H (3.48) BS11 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    19 6nwa:H (3.48) BS12 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    20 6nwa:H (3.48) BS13 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    21 6nwa:H (3.48) BS14 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    22 6nwa:H (3.48) BS15 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    23 6nwa:H (3.48) BS16 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    24 6nwa:H (3.48) BS17 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    25 6nwa:H (3.48) BS18 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    26 6nwa:H (3.48) BS19 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    27 6nwa:H (3.48) BS20 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    28 6nwa:H (3.48) BS21 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    29 6nwa:H (3.48) BS22 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    30 6nwa:H (3.48) BS23 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    31 6nwa:H (3.48) BS24 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    32 6nwa:H (3.48) BS25 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    33 6nwa:H (3.48) BS26 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    34 6nwa:H (3.48) BS27 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    35 6nwa:H (3.48) BS28 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    36 6nwa:H (3.48) BS29 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    37 6nwa:H (3.48) BS30 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    38 6nwa:H (3.48) BS31 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    39 6nwa:H (3.48) BS32 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    40 6nwa:H (3.48) BS33 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    41 6nwa:H (3.48) BS34 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    42 6nwa:H (3.48) BS35 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    43 6nwa:H (3.48) BS36 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    44 6nwa:H (3.48) BS37 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    45 6nwa:H (3.48) BS38 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    46 6nwa:H (3.48) BS39 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    47 6nwa:H (3.48) BS40 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    48 6nwa:H (3.48) BS41 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    49 6nwa:H (3.48) BS42 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    50 6nwa:H (3.48) BS43 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    51 6nwa:H (3.48) BS44 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    52 6nwa:H (3.48) BS45 PQN 1.97.1.12 GO:0000287 ... P29254 31133699
    53 6nwa:H (3.48) BS46 SF4 1.97.1.12 GO:0000287 ... P29254 31133699
    54 6nwa:H (3.48) BS47 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    55 6nwa:H (3.48) BS48 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    56 6nwa:H (3.48) BS49 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    57 6nwa:H (3.48) BS50 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    58 6nwa:Q (3.48) BS01 CLA ? GO:0009522 ... P29256 31133699
    59 6nwa:S (3.48) BS01 CLA ? GO:0009522 ... Q55329 31133699
    60 6nwa:S (3.48) BS02 CLA ? GO:0009522 ... Q55329 31133699
    61 6nwa:S (3.48) BS03 CLA ? GO:0009522 ... Q55329 31133699
    62 6nwa:T (3.48) BS01 CLA ? GO:0009522 ... P72712 31133699
    63 6nwa:T (3.48) BS02 CLA ? GO:0009522 ... P72712 31133699
    64 6nwa:U (3.48) BS03 CLA ? GO:0005886 ... P37277 31133699
    65 6nwa:U (3.48) BS04 CLA ? GO:0005886 ... P37277 31133699
    66 6nwa:U (3.48) BS05 CLA ? GO:0005886 ... P37277 31133699
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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