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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qhm:B (2.8) BS06 9YF 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    2 7qhm:D (2.8) BS07 IX7 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    3 7qhm:H (2.8) BS01 peptide ? N/A Q8NMB4 35087070
    4 7qhm:H (2.8) BS02 HEC ? N/A Q8NMB4 35087070
    5 7qhm:H (2.8) BS03 9YF ? N/A Q8NMB4 35087070
    6 7qhm:H (2.8) BS04 IX7 ? N/A Q8NMB4 35087070
    7 7qhm:I (2.8) BS02 9YF ? GO:0005886 ... Q8NP09 35087070
    8 7qhm:I (2.8) BS03 IX7 ? GO:0005886 ... Q8NP09 35087070
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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