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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8i0s:1
    (4.2)    		 BS02 >8i0s:H (identical to 8i0r:H, 8i0t:H, 8i0u:H)
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauaucugauguccucucgaggacggauuuuuggagcagggagau
ggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcagu
accuccaggaacggugc
................................................<<
<<........>>>>.<<<<<<..>>>>>>...............<<<<.<
<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.........
....>>>>>..>>>>>>
    		 N/A GO:0000245 ... O75533 39068178
    2 8i0s:2
    (4.2)    		 BS01 >8i0s:H (identical to 8i0r:H, 8i0t:H, 8i0u:H)
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauaucugauguccucucgaggacggauuuuuggagcagggagau
ggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcagu
accuccaggaacggugc
................................................<<
<<........>>>>.<<<<<<..>>>>>>...............<<<<.<
<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.........
....>>>>>..>>>>>>
    		 N/A GO:0000398 ... Q13435 39068178
    3 8i0s:A
    (4.2)    		 BS04 >8i0s:H (identical to 8i0r:H, 8i0t:H, 8i0u:H)
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauaucugauguccucucgaggacggauuuuuggagcagggagau
ggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcagu
accuccaggaacggugc
................................................<<
<<........>>>>.<<<<<<..>>>>>>...............<<<<.<
<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.........
....>>>>>..>>>>>>
    		 N/A GO:0000244 ... Q6P2Q9 39068178
    4 8i0s:h
    (4.2)    		 BS01 >8i0s:H (identical to 8i0r:H, 8i0t:H, 8i0u:H)
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauaucugauguccucucgaggacggauuuuuggagcagggagau
ggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcagu
accuccaggaacggugc
................................................<<
<<........>>>>.<<<<<<..>>>>>>...............<<<<.<
<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.........
....>>>>>..>>>>>>
    		 N/A GO:0000245 ... P62316 39068178
    5 8i0s:i
    (4.2)    		 BS01 >8i0s:H (identical to 8i0r:H, 8i0t:H, 8i0u:H)
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauaucugauguccucucgaggacggauuuuuggagcagggagau
ggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcagu
accuccaggaacggugc
................................................<<
<<........>>>>.<<<<<<..>>>>>>...............<<<<.<
<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.........
....>>>>>..>>>>>>
    		 N/A GO:0000387 ... P62306 39068178
    6 8i0s:j
    (4.2)    		 BS01 >8i0s:H (identical to 8i0r:H, 8i0t:H, 8i0u:H)
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauaucugauguccucucgaggacggauuuuuggagcagggagau
ggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcagu
accuccaggaacggugc
................................................<<
<<........>>>>.<<<<<<..>>>>>>...............<<<<.<
<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.........
....>>>>>..>>>>>>
    		 N/A GO:0000245 ... P62304 39068178
    7 8i0s:k
    (4.2)    		 BS01 >8i0s:H (identical to 8i0r:H, 8i0t:H, 8i0u:H)
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauaucugauguccucucgaggacggauuuuuggagcagggagau
ggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcagu
accuccaggaacggugc
................................................<<
<<........>>>>.<<<<<<..>>>>>>...............<<<<.<
<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.........
....>>>>>..>>>>>>
    		 N/A GO:0000245 ... P62308 39068178
    8 8i0s:l
    (4.2)    		 BS01 >8i0s:H (identical to 8i0r:H, 8i0t:H, 8i0u:H)
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauaucugauguccucucgaggacggauuuuuggagcagggagau
ggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcagu
accuccaggaacggugc
................................................<<
<<........>>>>.<<<<<<..>>>>>>...............<<<<.<
<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.........
....>>>>>..>>>>>>
    		 N/A GO:0000243 ... P62318 39068178
    9 8i0s:m
    (4.2)    		 BS01 >8i0s:H (identical to 8i0r:H, 8i0t:H, 8i0u:H)
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauaucugauguccucucgaggacggauuuuuggagcagggagau
ggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcagu
accuccaggaacggugc
................................................<<
<<........>>>>.<<<<<<..>>>>>>...............<<<<.<
<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.........
....>>>>>..>>>>>>
    		 N/A GO:0000387 ... P14678 39068178
    10 8i0s:n
    (4.2)    		 BS01 >8i0s:H (identical to 8i0r:H, 8i0t:H, 8i0u:H)
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauaucugauguccucucgaggacggauuuuuggagcagggagau
ggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcagu
accuccaggaacggugc
................................................<<
<<........>>>>.<<<<<<..>>>>>>...............<<<<.<
<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.........
....>>>>>..>>>>>>
    		 N/A GO:0000243 ... P62314 39068178
    11 8i0s:p
    (4.2)    		 BS01 >8i0s:H (identical to 8i0r:H, 8i0t:H, 8i0u:H)
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauaucugauguccucucgaggacggauuuuuggagcagggagau
ggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcagu
accuccaggaacggugc
................................................<<
<<........>>>>.<<<<<<..>>>>>>...............<<<<.<
<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.........
....>>>>>..>>>>>>
    		 N/A GO:0000398 ... P08579 39068178
    12 8i0s:w
    (4.2)    		 BS02 >8i0s:H (identical to 8i0r:H, 8i0t:H, 8i0u:H)
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauaucugauguccucucgaggacggauuuuuggagcagggagau
ggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcagu
accuccaggaacggugc
................................................<<
<<........>>>>.<<<<<<..>>>>>>...............<<<<.<
<<<...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<.........
....>>>>>..>>>>>>
    		 N/A GO:0000375 ... Q12874 39068178
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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