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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7s3d:G (2.91) BS01 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    2 7s3d:G (2.91) BS02 CL0 1.97.1.12 GO:0000287 ... B4WP20 34793839
    3 7s3d:G (2.91) BS03 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    4 7s3d:G (2.91) BS04 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    5 7s3d:G (2.91) BS05 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    6 7s3d:G (2.91) BS06 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    7 7s3d:G (2.91) BS07 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    8 7s3d:G (2.91) BS08 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    9 7s3d:G (2.91) BS09 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    10 7s3d:G (2.91) BS10 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    11 7s3d:G (2.91) BS11 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    12 7s3d:G (2.91) BS12 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    13 7s3d:G (2.91) BS13 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    14 7s3d:G (2.91) BS14 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    15 7s3d:G (2.91) BS15 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    16 7s3d:G (2.91) BS16 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    17 7s3d:G (2.91) BS17 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    18 7s3d:G (2.91) BS18 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    19 7s3d:G (2.91) BS19 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    20 7s3d:G (2.91) BS20 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    21 7s3d:G (2.91) BS21 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    22 7s3d:G (2.91) BS22 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    23 7s3d:G (2.91) BS23 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    24 7s3d:G (2.91) BS24 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    25 7s3d:G (2.91) BS25 F6C 1.97.1.12 GO:0000287 ... B4WP20 34793839
    26 7s3d:G (2.91) BS26 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    27 7s3d:G (2.91) BS27 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    28 7s3d:G (2.91) BS28 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    29 7s3d:G (2.91) BS29 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    30 7s3d:G (2.91) BS30 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    31 7s3d:G (2.91) BS31 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    32 7s3d:G (2.91) BS32 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    33 7s3d:G (2.91) BS33 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    34 7s3d:G (2.91) BS34 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    35 7s3d:G (2.91) BS35 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    36 7s3d:G (2.91) BS36 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    37 7s3d:G (2.91) BS37 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    38 7s3d:G (2.91) BS38 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    39 7s3d:G (2.91) BS39 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    40 7s3d:G (2.91) BS40 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    41 7s3d:G (2.91) BS41 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    42 7s3d:G (2.91) BS42 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    43 7s3d:G (2.91) BS43 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    44 7s3d:G (2.91) BS44 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    45 7s3d:G (2.91) BS45 PQN 1.97.1.12 GO:0000287 ... B4WP20 34793839
    46 7s3d:G (2.91) BS46 SF4 1.97.1.12 GO:0000287 ... B4WP20 34793839
    47 7s3d:G (2.91) BS47 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    48 7s3d:G (2.91) BS48 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    49 7s3d:G (2.91) BS49 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    50 7s3d:G (2.91) BS50 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    51 7s3d:G (2.91) BS51 CLA 1.97.1.12 GO:0000287 ... B4WP20 34793839
    52 7s3d:G (2.91) BS52 F6C 1.97.1.12 GO:0000287 ... B4WP20 34793839
    53 7s3d:H (2.91) BS01 CL0 1.97.1.12 GO:0000287 ... B4WP21 34793839
    54 7s3d:H (2.91) BS02 CLA 1.97.1.12 GO:0000287 ... B4WP21 34793839
    55 7s3d:H (2.91) BS03 CLA 1.97.1.12 GO:0000287 ... B4WP21 34793839
    56 7s3d:H (2.91) BS04 CLA 1.97.1.12 GO:0000287 ... B4WP21 34793839
    57 7s3d:H (2.91) BS05 CLA 1.97.1.12 GO:0000287 ... B4WP21 34793839
    58 7s3d:H (2.91) BS06 SF4 1.97.1.12 GO:0000287 ... B4WP21 34793839
    59 7s3d:Q (2.91) BS01 CLA ? GO:0009522 ... B4WP24 34793839
    60 7s3d:S (2.91) BS01 CLA ? GO:0009522 ... B4WP25 34793839
    61 7s3d:T (2.91) BS01 CLA ? GO:0009522 ... B4WL17 34793839
    62 7s3d:T (2.91) BS02 CLA ? GO:0009522 ... B4WL17 34793839
    63 7s3d:U (2.91) BS01 CLA ? GO:0009522 ... B4WP22 34793839
    64 7s3d:U (2.91) BS02 CLA ? GO:0009522 ... B4WP22 34793839
    65 7s3d:U (2.91) BS03 CLA ? GO:0009522 ... B4WP22 34793839
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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