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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7dco:1
    (2.5)    		 BS01 >7dco:G
    aaaauaaaaaaaaaaaaauuuguaagguauguauuauuuuuuaaaaaaaa
aaaaaaaaaaacuagauacuaacacauuuaauuuuuuuuuguuuuuuuuu
uuuuu
..................................................
..................................................
.....
    		 N/A GO:0000245 ... N/A 33243853
    2 7dco:2
    (2.5)    		 BS02 >7dco:G
    aaaauaaaaaaaaaaaaauuuguaagguauguauuauuuuuuaaaaaaaa
aaaaaaaaaaacuagauacuaacacauuuaauuuuuuuuuguuuuuuuuu
uuuuu
..................................................
..................................................
.....
    		 N/A GO:0005634 ... N/A 33243853
    3 7dco:4
    (2.5)    		 BS01 >7dco:G
    aaaauaaaaaaaaaaaaauuuguaagguauguauuauuuuuuaaaaaaaa
aaaaaaaaaaacuagauacuaacacauuuaauuuuuuuuuguuuuuuuuu
uuuuu
..................................................
..................................................
.....
    		 N/A GO:0003676 ... N/A 33243853
    4 7dco:5
    (2.5)    		 BS01 >7dco:G
    aaaauaaaaaaaaaaaaauuuguaagguauguauuauuuuuuaaaaaaaa
aaaaaaaaaaacuagauacuaacacauuuaauuuuuuuuuguuuuuuuuu
uuuuu
..................................................
..................................................
.....
    		 ? GO:0000398 ... N/A 33243853
    5 7dco:A
    (2.5)    		 BS03 >7dco:G
    aaaauaaaaaaaaaaaaauuuguaagguauguauuauuuuuuaaaaaaaa
aaaaaaaaaaacuagauacuaacacauuuaauuuuuuuuuguuuuuuuuu
uuuuu
..................................................
..................................................
.....
    		 N/A GO:0000398 ... N/A 33243853
    6 7dco:C
    (2.5)    		 BS02 >7dco:G
    aaaauaaaaaaaaaaaaauuuguaagguauguauuauuuuuuaaaaaaaa
aaaaaaaaaaacuagauacuaacacauuuaauuuuuuuuuguuuuuuuuu
uuuuu
..................................................
..................................................
.....
    		 ? GO:0003924 ... N/A 33243853
    7 7dco:M
    (2.5)    		 BS01 >7dco:G
    aaaauaaaaaaaaaaaaauuuguaagguauguauuauuuuuuaaaaaaaa
aaaaaaaaaaacuagauacuaacacauuuaauuuuuuuuuguuuuuuuuu
uuuuu
..................................................
..................................................
.....
    		 ? GO:0046872 ... N/A 33243853
    8 7dco:R
    (2.5)    		 BS02 >7dco:G
    aaaauaaaaaaaaaaaaauuuguaagguauguauuauuuuuuaaaaaaaa
aaaaaaaaaaacuagauacuaacacauuuaauuuuuuuuuguuuuuuuuu
uuuuu
..................................................
..................................................
.....
    		 ? GO:0003676 ... N/A 33243853
    9 7dco:X
    (2.5)    		 BS01 >7dco:G
    aaaauaaaaaaaaaaaaauuuguaagguauguauuauuuuuuaaaaaaaa
aaaaaaaaaaacuagauacuaacacauuuaauuuuuuuuuguuuuuuuuu
uuuuu
..................................................
..................................................
.....
    		 N/A GO:0000398 ... N/A 33243853
    10 7dco:u
    (2.5)    		 BS01 >7dco:G
    aaaauaaaaaaaaaaaaauuuguaagguauguauuauuuuuuaaaaaaaa
aaaaaaaaaaacuagauacuaacacauuuaauuuuuuuuuguuuuuuuuu
uuuuu
..................................................
..................................................
.....
    		 N/A GO:0000398 ... N/A 33243853
    11 7dco:v
    (2.5)    		 BS02 >7dco:G
    aaaauaaaaaaaaaaaaauuuguaagguauguauuauuuuuuaaaaaaaa
aaaaaaaaaaacuagauacuaacacauuuaauuuuuuuuuguuuuuuuuu
uuuuu
..................................................
..................................................
.....
    		 N/A GO:0003676 ... N/A 33243853
    12 7dco:x
    (2.5)    		 BS01 >7dco:G
    aaaauaaaaaaaaaaaaauuuguaagguauguauuauuuuuuaaaaaaaa
aaaaaaaaaaacuagauacuaacacauuuaauuuuuuuuuguuuuuuuuu
uuuuu
..................................................
..................................................
.....
    		 3.6.4.13 GO:0000349 ... P20095 33243853
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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