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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6lwd:D
    (2.41)    		 BS02 >6lwd:F (identical to 5itu:E, 5itu:G, 5itu:I, 6lwa:C, 6lwa:F, 6lwa:I, 6lwb:C, 6lwb:F, 6lwb:I, 6lwc:C, 6lwc:F, 6lwd:C, 6lwd:I, 6lwf:C, 6lwf:F, 6lwg:C, 6lwg:F, 6lwg:I, 6lwh:C, 6lwh:F, 6lwh:I, 6lwi:C, 6lwi:F, 6lwi:I, 6lwj:C, 6lwj:F, 6lwj:I, 6lwk:C, 6lwk:F, 6lwk:I, 6lwl:C, 6lwl:F, 6lwl:I, 6lwm:C, 6lwm:F, 6lwm:I, 6lwn:C, 6lwn:F, 6lwn:I, 6lwo:C, 6lwo:F, 6lwo:I, 6lwp:C, 6lwp:F, 6lwp:I, 6lwq:C, 6lwq:F, 6lwq:I, 6lwr:D, 6lwr:H)
    tagacctggacgg
    		 3.2.2.-
    4.2.99.18    		 GO:0003676 ... Q96FI4 34226550
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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