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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 4v54:DF
    (3.3)    		 BS01 >4v54:DA (identical to 5ady:A, 5aka:A, 3bbx:A, 8g2u:A, 8g31:A, 8g34:A, 8g38:A, 2j28:A, 6o9j:A, 8t5d:A, 8t5h:A, 4v4h:BA, 4v4h:DA, 4v4q:BA, 4v4q:DA, 4v50:BA, 4v50:DA, 4v52:BA, 4v52:DA, 4v53:BA, 4v53:DA, 4v54:BA, 4v55:BA, 4v55:DA, 4v56:BA, 4v56:DA, 4v57:BA, 4v57:DA, 4v5b:AA, 4v5b:CA, 4v5y:BA, 4v5y:DA, 4v64:BA, 4v64:DA, 4v65:BA, 4v66:BA, 4v69:BA, 4v6c:DB, 4v6d:DB, 4v6e:DB, 4v6y:BB, 4v6z:BB, 4v70:BB, 4v71:BB, 4v72:BB, 4v73:BB, 4v74:BB, 4v75:BB, 4v76:BB, 4v77:BB, 4v78:BB, 4v79:BB, 4v7a:BB, 4v7i:A7, 4v7s:DB, 4v7t:DB, 4v7u:DB, 4v7v:DB, 4www:YB)
    gccuggcggccguagcgcgguggucccaccugaccccaugccgaacucag
aagugaaacgccguagcgccgaugguaguguggggucuccccaugcgaga
guagggaacugccaggc
<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>>
..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>....
...>>...>>>>>>>>>
    		 ? GO:0000027 ... P62399 17660832
    2 4v54:DM
    (3.3)    		 BS01 >4v54:DA (identical to 5ady:A, 5aka:A, 3bbx:A, 8g2u:A, 8g31:A, 8g34:A, 8g38:A, 2j28:A, 6o9j:A, 8t5d:A, 8t5h:A, 4v4h:BA, 4v4h:DA, 4v4q:BA, 4v4q:DA, 4v50:BA, 4v50:DA, 4v52:BA, 4v52:DA, 4v53:BA, 4v53:DA, 4v54:BA, 4v55:BA, 4v55:DA, 4v56:BA, 4v56:DA, 4v57:BA, 4v57:DA, 4v5b:AA, 4v5b:CA, 4v5y:BA, 4v5y:DA, 4v64:BA, 4v64:DA, 4v65:BA, 4v66:BA, 4v69:BA, 4v6c:DB, 4v6d:DB, 4v6e:DB, 4v6y:BB, 4v6z:BB, 4v70:BB, 4v71:BB, 4v72:BB, 4v73:BB, 4v74:BB, 4v75:BB, 4v76:BB, 4v77:BB, 4v78:BB, 4v79:BB, 4v7a:BB, 4v7i:A7, 4v7s:DB, 4v7t:DB, 4v7u:DB, 4v7v:DB, 4www:YB)
    gccuggcggccguagcgcgguggucccaccugaccccaugccgaacucag
aagugaaacgccguagcgccgaugguaguguggggucuccccaugcgaga
guagggaacugccaggc
<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>>
..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>....
...>>...>>>>>>>>>
    		 ? GO:0000027 ... P0ADY7 17660832
    3 4v54:DO
    (3.3)    		 BS01 >4v54:DA (identical to 5ady:A, 5aka:A, 3bbx:A, 8g2u:A, 8g31:A, 8g34:A, 8g38:A, 2j28:A, 6o9j:A, 8t5d:A, 8t5h:A, 4v4h:BA, 4v4h:DA, 4v4q:BA, 4v4q:DA, 4v50:BA, 4v50:DA, 4v52:BA, 4v52:DA, 4v53:BA, 4v53:DA, 4v54:BA, 4v55:BA, 4v55:DA, 4v56:BA, 4v56:DA, 4v57:BA, 4v57:DA, 4v5b:AA, 4v5b:CA, 4v5y:BA, 4v5y:DA, 4v64:BA, 4v64:DA, 4v65:BA, 4v66:BA, 4v69:BA, 4v6c:DB, 4v6d:DB, 4v6e:DB, 4v6y:BB, 4v6z:BB, 4v70:BB, 4v71:BB, 4v72:BB, 4v73:BB, 4v74:BB, 4v75:BB, 4v76:BB, 4v77:BB, 4v78:BB, 4v79:BB, 4v7a:BB, 4v7i:A7, 4v7s:DB, 4v7t:DB, 4v7u:DB, 4v7v:DB, 4www:YB)
    gccuggcggccguagcgcgguggucccaccugaccccaugccgaacucag
aagugaaacgccguagcgccgaugguaguguggggucuccccaugcgaga
guagggaacugccaggc
<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>>
..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>....
...>>...>>>>>>>>>
    		 ? GO:0002181 ... P0C018 17660832
    4 4v54:DV
    (3.3)    		 BS01 >4v54:DA (identical to 5ady:A, 5aka:A, 3bbx:A, 8g2u:A, 8g31:A, 8g34:A, 8g38:A, 2j28:A, 6o9j:A, 8t5d:A, 8t5h:A, 4v4h:BA, 4v4h:DA, 4v4q:BA, 4v4q:DA, 4v50:BA, 4v50:DA, 4v52:BA, 4v52:DA, 4v53:BA, 4v53:DA, 4v54:BA, 4v55:BA, 4v55:DA, 4v56:BA, 4v56:DA, 4v57:BA, 4v57:DA, 4v5b:AA, 4v5b:CA, 4v5y:BA, 4v5y:DA, 4v64:BA, 4v64:DA, 4v65:BA, 4v66:BA, 4v69:BA, 4v6c:DB, 4v6d:DB, 4v6e:DB, 4v6y:BB, 4v6z:BB, 4v70:BB, 4v71:BB, 4v72:BB, 4v73:BB, 4v74:BB, 4v75:BB, 4v76:BB, 4v77:BB, 4v78:BB, 4v79:BB, 4v7a:BB, 4v7i:A7, 4v7s:DB, 4v7t:DB, 4v7u:DB, 4v7v:DB, 4www:YB)
    gccuggcggccguagcgcgguggucccaccugaccccaugccgaacucag
aagugaaacgccguagcgccgaugguaguguggggucuccccaugcgaga
guagggaacugccaggc
<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>>
..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>....
...>>...>>>>>>>>>
    		 ? GO:0000027 ... P68919 17660832
    5 4v54:DW
    (3.3)    		 BS01 >4v54:DA (identical to 5ady:A, 5aka:A, 3bbx:A, 8g2u:A, 8g31:A, 8g34:A, 8g38:A, 2j28:A, 6o9j:A, 8t5d:A, 8t5h:A, 4v4h:BA, 4v4h:DA, 4v4q:BA, 4v4q:DA, 4v50:BA, 4v50:DA, 4v52:BA, 4v52:DA, 4v53:BA, 4v53:DA, 4v54:BA, 4v55:BA, 4v55:DA, 4v56:BA, 4v56:DA, 4v57:BA, 4v57:DA, 4v5b:AA, 4v5b:CA, 4v5y:BA, 4v5y:DA, 4v64:BA, 4v64:DA, 4v65:BA, 4v66:BA, 4v69:BA, 4v6c:DB, 4v6d:DB, 4v6e:DB, 4v6y:BB, 4v6z:BB, 4v70:BB, 4v71:BB, 4v72:BB, 4v73:BB, 4v74:BB, 4v75:BB, 4v76:BB, 4v77:BB, 4v78:BB, 4v79:BB, 4v7a:BB, 4v7i:A7, 4v7s:DB, 4v7t:DB, 4v7u:DB, 4v7v:DB, 4www:YB)
    gccuggcggccguagcgcgguggucccaccugaccccaugccgaacucag
aagugaaacgccguagcgccgaugguaguguggggucuccccaugcgaga
guagggaacugccaggc
<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>>
..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>....
...>>...>>>>>>>>>
    		 ? GO:0000027 ... P0A7L8 17660832
    6 4v54:DY
    (3.3)    		 BS01 >4v54:DA (identical to 5ady:A, 5aka:A, 3bbx:A, 8g2u:A, 8g31:A, 8g34:A, 8g38:A, 2j28:A, 6o9j:A, 8t5d:A, 8t5h:A, 4v4h:BA, 4v4h:DA, 4v4q:BA, 4v4q:DA, 4v50:BA, 4v50:DA, 4v52:BA, 4v52:DA, 4v53:BA, 4v53:DA, 4v54:BA, 4v55:BA, 4v55:DA, 4v56:BA, 4v56:DA, 4v57:BA, 4v57:DA, 4v5b:AA, 4v5b:CA, 4v5y:BA, 4v5y:DA, 4v64:BA, 4v64:DA, 4v65:BA, 4v66:BA, 4v69:BA, 4v6c:DB, 4v6d:DB, 4v6e:DB, 4v6y:BB, 4v6z:BB, 4v70:BB, 4v71:BB, 4v72:BB, 4v73:BB, 4v74:BB, 4v75:BB, 4v76:BB, 4v77:BB, 4v78:BB, 4v79:BB, 4v7a:BB, 4v7i:A7, 4v7s:DB, 4v7t:DB, 4v7u:DB, 4v7v:DB, 4www:YB)
    gccuggcggccguagcgcgguggucccaccugaccccaugccgaacucag
aagugaaacgccguagcgccgaugguaguguggggucuccccaugcgaga
guagggaacugccaggc
<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>>
..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>....
...>>...>>>>>>>>>
    		 ? GO:0000027 ... P0AG51 17660832
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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