BioLiP

Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>
gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>
gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>
gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>
gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>
gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>
gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>
gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>
gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>
gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>
gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>
gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>
gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>
gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu
cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga
gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu
uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg
guacaaauggcagucugacaagu
..................................................
.............<<<<<.................<<<<<<<<<<<....
<........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<<
<<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>>
>>>>>>>.>>........>>>>>

#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	7aju:CB (3.8)	BS01	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	2.1.1.-	GO:0000451 ...	P15646	33326748
2	7aju:CD (3.8)	BS01	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	?	GO:0000154 ...	Q12460	33326748
3	7aju:CE (3.8)	BS02	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	?	GO:0000447 ...	Q12499	33326748
4	7aju:CF (3.8)	BS01	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	?	GO:0000245 ...	P39990	33326748
5	7aju:CG (3.8)	BS01	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	?	GO:0000245 ...	P39990	33326748
6	7aju:CH (3.8)	BS02	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	?	GO:0000447 ...	Q06506	33326748
7	7aju:CI (3.8)	BS02	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	?	GO:0003723 ...	P32899	33326748
8	7aju:JM (3.8)	BS02	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	?	GO:0000447 ...	Q12035	33326748
9	7aju:JP (3.8)	BS02	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	?	GO:0000462 ...	P33750	33326748
10	7aju:UC (3.8)	BS02	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	?	GO:0000447 ...	Q12136	33326748
11	7aju:UG (3.8)	BS03	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	?	GO:0000447 ...	P40055	33326748
12	7aju:UJ (3.8)	BS01	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	?	GO:0000447 ...	P42945	33326748
13	7aju:UK (3.8)	BS02	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	?	GO:0000447 ...	P34247	33326748
14	7aju:UQ (3.8)	BS02	>7aju:D4 gucgacguacuucaaggaucaucuauaggaaucgucacucuuugacucuu cccacugaauccaacuugguugaugagucccauaaccuuuguaccccaga gugagaaauagcuugguccgcaauccuuagcgguucggccaucuauaauu uugaauaaaaauuuugccguugcuauggcgcgaugaucacccaugggugg guacaaauggcagucugacaagu .................................................. .............<<<<<.................<<<<<<<<<<<.... <........<<..<<<.<<<.<<<<......>>>>>>>>>>.>>..<<<< <<....>>>.>>>..<<<<<....>>>>>........><<<<..>>>>>> >>>>>>>.>>........>>>>>	?	GO:0000462 ...	Q02931	33326748