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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6j6h:A
    (3.6)    		 BS03 >6j6h:D (identical to 7dco:B, 6j6g:D, 6j6n:D, 6j6q:D)
    aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugug
ggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccag
aaccauccggguguugucuccauagaaacagguaaagcuguccguuacug
ugggcuugccauauuuuuuggaacuuuuc
...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<
<<<....>>>>>>>>..............<<<<<<<<...........>>
>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>
>>>>>.>>.....................
    		 ? GO:0000244 ... P33334 30879786
    2 6j6h:C
    (3.6)    		 BS01 >6j6h:D (identical to 7dco:B, 6j6g:D, 6j6n:D, 6j6q:D)
    aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugug
ggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccag
aaccauccggguguugucuccauagaaacagguaaagcuguccguuacug
ugggcuugccauauuuuuuggaacuuuuc
...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<
<<<....>>>>>>>>..............<<<<<<<<...........>>
>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>
>>>>>.>>.....................
    		 ? GO:0000244 ... P36048 30879786
    3 6j6h:S
    (3.6)    		 BS01 >6j6h:D (identical to 7dco:B, 6j6g:D, 6j6n:D, 6j6q:D)
    aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugug
ggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccag
aaccauccggguguugucuccauagaaacagguaaagcuguccguuacug
ugggcuugccauauuuuuuggaacuuuuc
...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<
<<<....>>>>>>>>..............<<<<<<<<...........>>
>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>
>>>>>.>>.....................
    		 ? GO:0000398 ... Q03772 30879786
    4 6j6h:T
    (3.6)    		 BS02 >6j6h:D (identical to 7dco:B, 6j6g:D, 6j6n:D, 6j6q:D)
    aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugug
ggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccag
aaccauccggguguugucuccauagaaacagguaaagcuguccguuacug
ugggcuugccauauuuuuuggaacuuuuc
...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<
<<<....>>>>>>>>..............<<<<<<<<...........>>
>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>
>>>>>.>>.....................
    		 ? GO:0000282 ... P25337 30879786
    5 6j6h:g
    (3.6)    		 BS01 >6j6h:D (identical to 7dco:B, 6j6g:D, 6j6n:D, 6j6q:D)
    aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugug
ggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccag
aaccauccggguguugucuccauagaaacagguaaagcuguccguuacug
ugggcuugccauauuuuuuggaacuuuuc
...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<
<<<....>>>>>>>>..............<<<<<<<<...........>>
>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>
>>>>>.>>.....................
    		 ? GO:0000243 ... Q06217 30879786
    6 6j6h:h
    (3.6)    		 BS01 >6j6h:D (identical to 7dco:B, 6j6g:D, 6j6n:D, 6j6q:D)
    aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugug
ggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccag
aaccauccggguguugucuccauagaaacagguaaagcuguccguuacug
ugggcuugccauauuuuuuggaacuuuuc
...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<
<<<....>>>>>>>>..............<<<<<<<<...........>>
>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>
>>>>>.>>.....................
    		 ? GO:0000243 ... P54999 30879786
    7 6j6h:i
    (3.6)    		 BS01 >6j6h:D (identical to 7dco:B, 6j6g:D, 6j6n:D, 6j6q:D)
    aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugug
ggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccag
aaccauccggguguugucuccauagaaacagguaaagcuguccguuacug
ugggcuugccauauuuuuuggaacuuuuc
...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<
<<<....>>>>>>>>..............<<<<<<<<...........>>
>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>
>>>>>.>>.....................
    		 ? GO:0000243 ... Q12330 30879786
    8 6j6h:j
    (3.6)    		 BS01 >6j6h:D (identical to 7dco:B, 6j6g:D, 6j6n:D, 6j6q:D)
    aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugug
ggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccag
aaccauccggguguugucuccauagaaacagguaaagcuguccguuacug
ugggcuugccauauuuuuuggaacuuuuc
...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<
<<<....>>>>>>>>..............<<<<<<<<...........>>
>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>
>>>>>.>>.....................
    		 ? GO:0000243 ... P40204 30879786
    9 6j6h:k
    (3.6)    		 BS01 >6j6h:D (identical to 7dco:B, 6j6g:D, 6j6n:D, 6j6q:D)
    aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugug
ggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccag
aaccauccggguguugucuccauagaaacagguaaagcuguccguuacug
ugggcuugccauauuuuuuggaacuuuuc
...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<
<<<....>>>>>>>>..............<<<<<<<<...........>>
>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>
>>>>>.>>.....................
    		 ? GO:0000243 ... P40018 30879786
    10 6j6h:l
    (3.6)    		 BS01 >6j6h:D (identical to 7dco:B, 6j6g:D, 6j6n:D, 6j6q:D)
    aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugug
ggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccag
aaccauccggguguugucuccauagaaacagguaaagcuguccguuacug
ugggcuugccauauuuuuuggaacuuuuc
...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<
<<<....>>>>>>>>..............<<<<<<<<...........>>
>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>
>>>>>.>>.....................
    		 ? GO:0000243 ... P43321 30879786
    11 6j6h:m
    (3.6)    		 BS01 >6j6h:D (identical to 7dco:B, 6j6g:D, 6j6n:D, 6j6q:D)
    aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugug
ggccuuugccuauagaacuuauaacgaacaugguucuugccuuuuaccag
aaccauccggguguugucuccauagaaacagguaaagcuguccguuacug
ugggcuugccauauuuuuuggaacuuuuc
...<<<<<<.<<<<.......<<<<..<<<<<.<<<<<<<.....<<<<<
<<<....>>>>>>>>..............<<<<<<<<...........>>
>>>>>>...>>>>>>>>>>>>......<<<<......>>>>>>>>..>>>
>>>>>.>>.....................
    		 ? GO:0000243 ... Q02260 30879786
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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