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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 2pjr:F
    (2.9)    		 BS01 >2pjr:D (identical to 4a75:B, 4a75:F, 4a76:H, 5gkp:C, 5gkp:D, 4hqb:N, 1i8m:T, 5ip3:D, 2nmv:D, 2pjr:C, 6s3h:E, 6s3i:C, 8s9i:B, 3udg:D, 3udg:E, 3udg:G, 2vtb:G, 2vtb:H, 2vtb:I, 2vtb:J, 1xhz:E, 1xhz:G, 1xhz:H, 5zkl:B)
    ttttt
    		 5.6.2.4 GO:0003677 ... P56255 10199404
    2 2pjr:G
    (2.9)    		 BS01 >2pjr:D (identical to 4a75:B, 4a75:F, 4a76:H, 5gkp:C, 5gkp:D, 4hqb:N, 1i8m:T, 5ip3:D, 2nmv:D, 2pjr:C, 6s3h:E, 6s3i:C, 8s9i:B, 3udg:D, 3udg:E, 3udg:G, 2vtb:G, 2vtb:H, 2vtb:I, 2vtb:J, 1xhz:E, 1xhz:G, 1xhz:H, 5zkl:B)
    ttttt
    		 5.6.2.4 GO:0003677 ... P56255 10199404
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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