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BioLiP
Download all results in tab-seperated text for 5 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 4v7p:CF
    (3.62)    		 BS02 >4v7p:CB (identical to 6c5l:BB, 6c5l:DB, 5d8b:WC, 5d8b:AD, 7lh5:DB, 6n1d:A5S, 6n1d:B5S, 5ot7:5, 6q95:3, 4v51:BB, 4v51:DB, 4v5a:BB, 4v5a:DB, 4v5c:BB, 4v5c:DB, 4v5d:BB, 4v5d:DB, 4v5e:BB, 4v5e:DB, 4v5f:BB, 4v5f:DB, 4v5g:BB, 4v5g:DB, 4v5j:BB, 4v5j:DB, 4v5k:BB, 4v5k:DB, 4v5l:BB, 4v5m:BB, 4v5n:BB, 4v5p:BB, 4v5p:DB, 4v5q:BB, 4v5q:DB, 4v5r:BB, 4v5r:DB, 4v5s:BB, 4v5s:DB, 4v63:BB, 4v63:DB, 4v67:BB, 4v67:DB, 4v68:BB, 4v6a:BB, 4v6a:DB, 4v7j:AB, 4v7j:BB, 4v7k:AB, 4v7k:BB, 4v7m:BB, 4v7m:DB, 4v7p:BB, 4v7w:BB, 4v7w:DB, 4v7x:BB, 4v7x:DB, 4v7y:BB, 4v7y:DB, 4v7z:BB, 4v7z:DB, 4v83:BB, 4v83:DB, 4v84:BB, 4v84:DB, 4v8j:BB, 4v8j:DB, 4v8n:BB, 4v8n:DB, 4v8o:BB, 4v8q:AB, 4v8u:BB, 4v8u:DB, 4v8x:BB, 4v8x:DB, 4v90:BB, 4v97:BB, 4v97:DB, 4v9h:BB, 4v9i:BB, 4v9i:DB, 4v9j:BB, 4v9j:DB, 4v9k:BB, 4v9k:DB, 4v9l:BB, 4v9l:DB, 4v9m:BB, 4v9m:DB, 4v9n:BB, 4v9n:DB, 4v9q:AB, 4v9q:CB, 4w29:BB, 4w29:DB, 4wt8:Cs, 4wt8:Ds, 4xej:A5S, 4xej:B5S)
    ucccccgugcccauagcggcguggaaccacccguucccauuccgaacacg
gaagugaaacgcgccagcgccgaugguacugggcgggcgaccgccuggga
gaguaggucggugcggggg
.<<<<<<<<<<....<<<<<<<<....<<<<<<...............>>
>..>>>...>>>>>>.>><<<.....<.<<<<<<<<....>>>>>>>>..
.>...>>>.>>>>>>>>>>
    		 ? GO:0000049 ... Q72I16 20588254
    2 4v7p:CM
    (3.62)    		 BS02 >4v7p:CB (identical to 6c5l:BB, 6c5l:DB, 5d8b:WC, 5d8b:AD, 7lh5:DB, 6n1d:A5S, 6n1d:B5S, 5ot7:5, 6q95:3, 4v51:BB, 4v51:DB, 4v5a:BB, 4v5a:DB, 4v5c:BB, 4v5c:DB, 4v5d:BB, 4v5d:DB, 4v5e:BB, 4v5e:DB, 4v5f:BB, 4v5f:DB, 4v5g:BB, 4v5g:DB, 4v5j:BB, 4v5j:DB, 4v5k:BB, 4v5k:DB, 4v5l:BB, 4v5m:BB, 4v5n:BB, 4v5p:BB, 4v5p:DB, 4v5q:BB, 4v5q:DB, 4v5r:BB, 4v5r:DB, 4v5s:BB, 4v5s:DB, 4v63:BB, 4v63:DB, 4v67:BB, 4v67:DB, 4v68:BB, 4v6a:BB, 4v6a:DB, 4v7j:AB, 4v7j:BB, 4v7k:AB, 4v7k:BB, 4v7m:BB, 4v7m:DB, 4v7p:BB, 4v7w:BB, 4v7w:DB, 4v7x:BB, 4v7x:DB, 4v7y:BB, 4v7y:DB, 4v7z:BB, 4v7z:DB, 4v83:BB, 4v83:DB, 4v84:BB, 4v84:DB, 4v8j:BB, 4v8j:DB, 4v8n:BB, 4v8n:DB, 4v8o:BB, 4v8q:AB, 4v8u:BB, 4v8u:DB, 4v8x:BB, 4v8x:DB, 4v90:BB, 4v97:BB, 4v97:DB, 4v9h:BB, 4v9i:BB, 4v9i:DB, 4v9j:BB, 4v9j:DB, 4v9k:BB, 4v9k:DB, 4v9l:BB, 4v9l:DB, 4v9m:BB, 4v9m:DB, 4v9n:BB, 4v9n:DB, 4v9q:AB, 4v9q:CB, 4w29:BB, 4w29:DB, 4wt8:Cs, 4wt8:Ds, 4xej:A5S, 4xej:B5S)
    ucccccgugcccauagcggcguggaaccacccguucccauuccgaacacg
gaagugaaacgcgccagcgccgaugguacugggcgggcgaccgccuggga
gaguaggucggugcggggg
.<<<<<<<<<<....<<<<<<<<....<<<<<<...............>>
>..>>>...>>>>>>.>><<<.....<.<<<<<<<<....>>>>>>>>..
.>...>>>.>>>>>>>>>>
    		 ? GO:0000049 ... Q72I11 20588254
    3 4v7p:CO
    (3.62)    		 BS02 >4v7p:CB (identical to 6c5l:BB, 6c5l:DB, 5d8b:WC, 5d8b:AD, 7lh5:DB, 6n1d:A5S, 6n1d:B5S, 5ot7:5, 6q95:3, 4v51:BB, 4v51:DB, 4v5a:BB, 4v5a:DB, 4v5c:BB, 4v5c:DB, 4v5d:BB, 4v5d:DB, 4v5e:BB, 4v5e:DB, 4v5f:BB, 4v5f:DB, 4v5g:BB, 4v5g:DB, 4v5j:BB, 4v5j:DB, 4v5k:BB, 4v5k:DB, 4v5l:BB, 4v5m:BB, 4v5n:BB, 4v5p:BB, 4v5p:DB, 4v5q:BB, 4v5q:DB, 4v5r:BB, 4v5r:DB, 4v5s:BB, 4v5s:DB, 4v63:BB, 4v63:DB, 4v67:BB, 4v67:DB, 4v68:BB, 4v6a:BB, 4v6a:DB, 4v7j:AB, 4v7j:BB, 4v7k:AB, 4v7k:BB, 4v7m:BB, 4v7m:DB, 4v7p:BB, 4v7w:BB, 4v7w:DB, 4v7x:BB, 4v7x:DB, 4v7y:BB, 4v7y:DB, 4v7z:BB, 4v7z:DB, 4v83:BB, 4v83:DB, 4v84:BB, 4v84:DB, 4v8j:BB, 4v8j:DB, 4v8n:BB, 4v8n:DB, 4v8o:BB, 4v8q:AB, 4v8u:BB, 4v8u:DB, 4v8x:BB, 4v8x:DB, 4v90:BB, 4v97:BB, 4v97:DB, 4v9h:BB, 4v9i:BB, 4v9i:DB, 4v9j:BB, 4v9j:DB, 4v9k:BB, 4v9k:DB, 4v9l:BB, 4v9l:DB, 4v9m:BB, 4v9m:DB, 4v9n:BB, 4v9n:DB, 4v9q:AB, 4v9q:CB, 4w29:BB, 4w29:DB, 4wt8:Cs, 4wt8:Ds, 4xej:A5S, 4xej:B5S)
    ucccccgugcccauagcggcguggaaccacccguucccauuccgaacacg
gaagugaaacgcgccagcgccgaugguacugggcgggcgaccgccuggga
gaguaggucggugcggggg
.<<<<<<<<<<....<<<<<<<<....<<<<<<...............>>
>..>>>...>>>>>>.>><<<.....<.<<<<<<<<....>>>>>>>>..
.>...>>>.>>>>>>>>>>
    		 ? GO:0003735 ... Q72I20 20588254
    4 4v7p:CV
    (3.62)    		 BS02 >4v7p:CB (identical to 6c5l:BB, 6c5l:DB, 5d8b:WC, 5d8b:AD, 7lh5:DB, 6n1d:A5S, 6n1d:B5S, 5ot7:5, 6q95:3, 4v51:BB, 4v51:DB, 4v5a:BB, 4v5a:DB, 4v5c:BB, 4v5c:DB, 4v5d:BB, 4v5d:DB, 4v5e:BB, 4v5e:DB, 4v5f:BB, 4v5f:DB, 4v5g:BB, 4v5g:DB, 4v5j:BB, 4v5j:DB, 4v5k:BB, 4v5k:DB, 4v5l:BB, 4v5m:BB, 4v5n:BB, 4v5p:BB, 4v5p:DB, 4v5q:BB, 4v5q:DB, 4v5r:BB, 4v5r:DB, 4v5s:BB, 4v5s:DB, 4v63:BB, 4v63:DB, 4v67:BB, 4v67:DB, 4v68:BB, 4v6a:BB, 4v6a:DB, 4v7j:AB, 4v7j:BB, 4v7k:AB, 4v7k:BB, 4v7m:BB, 4v7m:DB, 4v7p:BB, 4v7w:BB, 4v7w:DB, 4v7x:BB, 4v7x:DB, 4v7y:BB, 4v7y:DB, 4v7z:BB, 4v7z:DB, 4v83:BB, 4v83:DB, 4v84:BB, 4v84:DB, 4v8j:BB, 4v8j:DB, 4v8n:BB, 4v8n:DB, 4v8o:BB, 4v8q:AB, 4v8u:BB, 4v8u:DB, 4v8x:BB, 4v8x:DB, 4v90:BB, 4v97:BB, 4v97:DB, 4v9h:BB, 4v9i:BB, 4v9i:DB, 4v9j:BB, 4v9j:DB, 4v9k:BB, 4v9k:DB, 4v9l:BB, 4v9l:DB, 4v9m:BB, 4v9m:DB, 4v9n:BB, 4v9n:DB, 4v9q:AB, 4v9q:CB, 4w29:BB, 4w29:DB, 4wt8:Cs, 4wt8:Ds, 4xej:A5S, 4xej:B5S)
    ucccccgugcccauagcggcguggaaccacccguucccauuccgaacacg
gaagugaaacgcgccagcgccgaugguacugggcgggcgaccgccuggga
gaguaggucggugcggggg
.<<<<<<<<<<....<<<<<<<<....<<<<<<...............>>
>..>>>...>>>>>>.>><<<.....<.<<<<<<<<....>>>>>>>>..
.>...>>>.>>>>>>>>>>
    		 ? GO:0003723 ... Q72IA7 20588254
    5 4v7p:CW
    (3.62)    		 BS02 >4v7p:CB (identical to 6c5l:BB, 6c5l:DB, 5d8b:WC, 5d8b:AD, 7lh5:DB, 6n1d:A5S, 6n1d:B5S, 5ot7:5, 6q95:3, 4v51:BB, 4v51:DB, 4v5a:BB, 4v5a:DB, 4v5c:BB, 4v5c:DB, 4v5d:BB, 4v5d:DB, 4v5e:BB, 4v5e:DB, 4v5f:BB, 4v5f:DB, 4v5g:BB, 4v5g:DB, 4v5j:BB, 4v5j:DB, 4v5k:BB, 4v5k:DB, 4v5l:BB, 4v5m:BB, 4v5n:BB, 4v5p:BB, 4v5p:DB, 4v5q:BB, 4v5q:DB, 4v5r:BB, 4v5r:DB, 4v5s:BB, 4v5s:DB, 4v63:BB, 4v63:DB, 4v67:BB, 4v67:DB, 4v68:BB, 4v6a:BB, 4v6a:DB, 4v7j:AB, 4v7j:BB, 4v7k:AB, 4v7k:BB, 4v7m:BB, 4v7m:DB, 4v7p:BB, 4v7w:BB, 4v7w:DB, 4v7x:BB, 4v7x:DB, 4v7y:BB, 4v7y:DB, 4v7z:BB, 4v7z:DB, 4v83:BB, 4v83:DB, 4v84:BB, 4v84:DB, 4v8j:BB, 4v8j:DB, 4v8n:BB, 4v8n:DB, 4v8o:BB, 4v8q:AB, 4v8u:BB, 4v8u:DB, 4v8x:BB, 4v8x:DB, 4v90:BB, 4v97:BB, 4v97:DB, 4v9h:BB, 4v9i:BB, 4v9i:DB, 4v9j:BB, 4v9j:DB, 4v9k:BB, 4v9k:DB, 4v9l:BB, 4v9l:DB, 4v9m:BB, 4v9m:DB, 4v9n:BB, 4v9n:DB, 4v9q:AB, 4v9q:CB, 4w29:BB, 4w29:DB, 4wt8:Cs, 4wt8:Ds, 4xej:A5S, 4xej:B5S)
    ucccccgugcccauagcggcguggaaccacccguucccauuccgaacacg
gaagugaaacgcgccagcgccgaugguacugggcgggcgaccgccuggga
gaguaggucggugcggggg
.<<<<<<<<<<....<<<<<<<<....<<<<<<...............>>
>..>>>...>>>>>>.>><<<.....<.<<<<<<<<....>>>>>>>>..
.>...>>>.>>>>>>>>>>
    		 ? GO:0003735 ... Q72HR3 20588254
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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