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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6sg9:CI
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 ? GO:0003735 ... Q57W62 31515389
    2 6sg9:CK
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 ? GO:0003735 ... Q389T7 31515389
    3 6sg9:CN
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 ? GO:0005739 ... Q580I0 31515389
    4 6sg9:CS
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 N/A N/A N/A 31515389
    5 6sg9:DF
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 N/A N/A N/A 31515389
    6 6sg9:DG
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 N/A N/A N/A 31515389
    7 6sg9:DH
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 N/A N/A N/A 31515389
    8 6sg9:DJ
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 ? GO:0005737 ... Q584U8 31515389
    9 6sg9:DV
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 ? GO:0005739 ... Q57UZ6 31515389
    10 6sg9:DW
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 N/A N/A N/A 31515389
    11 6sg9:DX
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 ? GO:0005739 ... Q383G5 31515389
    12 6sg9:F1
    (3.1)    		 BS03 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 ? GO:0003735 ... Q385R2 31515389
    13 6sg9:FF
    (3.1)    		 BS02 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 2.1.1.- GO:0005739 ... Q57W60 31515389
    14 6sg9:FG
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 N/A N/A N/A 31515389
    15 6sg9:FL
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 N/A N/A N/A 31515389
    16 6sg9:Fa
    (3.1)    		 BS01 >6sg9:CA
    aaauuauauuauauuauauuuauucauauaauuaauaggauaauauuugu
aguuuuugauaccaugauaaggauuauaaauugaaaguguuaauaucaua
aucaaaauuuauuauuuauauuaaauauguauguguagauaaaaua
........<<<<.....<<.<<...<<<......................
...............<.<<<.<.<...........>.>.>>>.>......
.........>>>....>>.>>.............>>>>........
    		 ? GO:0005739 ... Q57VU7 31515389
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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