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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6hiz:CI
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0003735 ... Q57W62 30213880
    2 6hiz:CJ
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0005737 ... Q57Z45 30213880
    3 6hiz:CK
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0003735 ... Q389T7 30213880
    4 6hiz:CN
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0005739 ... Q580I0 30213880
    5 6hiz:CR
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0003723 ... Q38AS2 30213880
    6 6hiz:CS
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0005739 ... Q584T8 30213880
    7 6hiz:Ci
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0005739 ... Q57WW0 30213880
    8 6hiz:DB
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0005654 ... Q586P5 30213880
    9 6hiz:DF
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0005737 ... Q38ET1 30213880
    10 6hiz:DH
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0003729 ... Q580V1 30213880
    11 6hiz:DJ
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0005737 ... Q584U8 30213880
    12 6hiz:DL
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0005739 ... Q38BS2 30213880
    13 6hiz:DT
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0004792 ... Q586G5 30213880
    14 6hiz:DV
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0005739 ... Q57UZ6 30213880
    15 6hiz:DW
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0005739 ... Q383N9 30213880
    16 6hiz:DX
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0005739 ... Q383G5 30213880
    17 6hiz:DY
    (3.08)    		 BS01 >6hiz:CA (identical to 7aor:A)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0005739 ... Q57YD4 30213880
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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