BioLiP

Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	5umd:3 (3.2)	BS02	>5umd:C (identical to 3j79:C, 3jbn:AC, 3jbo:AC, 3jbp:AC, 8tpu:AC) agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa a ............................................<<<<<< .((.....>>>.....<.<<<<..<<.)).>>.......>>>>..>...> >>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............ .	?	GO:0000463 ...	Q8IIB4	28288098
2	5umd:F (3.2)	BS02	>5umd:C (identical to 3j79:C, 3jbn:AC, 3jbo:AC, 3jbp:AC, 8tpu:AC) agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa a ............................................<<<<<< .((.....>>>.....<.<<<<..<<.)).>>.......>>>>..>...> >>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............ .	?	GO:0003723 ...	Q8I431	28288098
3	5umd:L (3.2)	BS02	>5umd:C (identical to 3j79:C, 3jbn:AC, 3jbo:AC, 3jbp:AC, 8tpu:AC) agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa a ............................................<<<<<< .((.....>>>.....<.<<<<..<<.)).>>.......>>>>..>...> >>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............ .	?	GO:0003723 ...	Q8IAX6	28288098
4	5umd:P (3.2)	BS02	>5umd:C (identical to 3j79:C, 3jbn:AC, 3jbo:AC, 3jbp:AC, 8tpu:AC) agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa a ............................................<<<<<< .((.....>>>.....<.<<<<..<<.)).>>.......>>>>..>...> >>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............ .	?	GO:0002181 ...	C0H4A6	28288098
5	5umd:W (3.2)	BS02	>5umd:C (identical to 3j79:C, 3jbn:AC, 3jbo:AC, 3jbp:AC, 8tpu:AC) agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa a ............................................<<<<<< .((.....>>>.....<.<<<<..<<.)).>>.......>>>>..>...> >>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............ .	?	GO:0002181 ...	Q8IDI5	28288098
6	5umd:Y (3.2)	BS02	>5umd:C (identical to 3j79:C, 3jbn:AC, 3jbo:AC, 3jbp:AC, 8tpu:AC) agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa a ............................................<<<<<< .((.....>>>.....<.<<<<..<<.)).>>.......>>>>..>...> >>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............ .	?	GO:0000027 ...	Q8IE82	28288098
7	5umd:Z (3.2)	BS02	>5umd:C (identical to 3j79:C, 3jbn:AC, 3jbo:AC, 3jbp:AC, 8tpu:AC) agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa a ............................................<<<<<< .((.....>>>.....<.<<<<..<<.)).>>.......>>>>..>...> >>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............ .	?	GO:0002181 ...	O77364	28288098
8	5umd:c (3.2)	BS02	>5umd:C (identical to 3j79:C, 3jbn:AC, 3jbo:AC, 3jbp:AC, 8tpu:AC) agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa a ............................................<<<<<< .((.....>>>.....<.<<<<..<<.)).>>.......>>>>..>...> >>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............ .	?	GO:0003723 ...	C0H4L5	28288098
9	5umd:e (3.2)	BS02	>5umd:C (identical to 3j79:C, 3jbn:AC, 3jbo:AC, 3jbp:AC, 8tpu:AC) agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa a ............................................<<<<<< .((.....>>>.....<.<<<<..<<.)).>>.......>>>>..>...> >>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............ .	?	GO:0003735 ...	C0H4H3	28288098