Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5new:A
    (2.511)    		 BS02 >5new:C (identical to 6a4e:B, 6a4e:D, 3af6:C, 6d30:C, 1ddl:E, 3er9:D, 4ht9:E, 3ie1:G, 3iem:M, 3iem:O, 3iem:P, 6j7z:C, 5kal:Y, 5kal:Z, 7m2t:t, 7m2t:u, 7m2t:v, 7m2t:w, 7m2t:x, 7m2t:y, 7m2t:z, 7m2t:1, 7m2t:2, 7m2t:3, 7m2t:4, 7m2t:5, 7m2t:6, 7m2t:8, 7m2t:ww, 7m2t:xx, 7m2t:yy, 7m2t:zz, 7m57:t, 7m57:u, 7m57:v, 7m57:x, 7m57:y, 7m57:z, 7m57:1, 7m57:2, 7m57:3, 7m57:4, 7m57:5, 7m57:6, 7m57:8, 7m57:ww, 7m57:xx, 7m57:yy, 4nia:t, 4nia:u, 4nia:v, 4nia:w, 4nia:x, 4nia:y, 4nia:z, 4nia:1, 4nia:2, 4nia:3, 4nia:4, 4nia:5, 4nia:6, 4nia:7, 4nia:8, 4oq8:D, 4oq9:t, 4oq9:u, 4oq9:v, 4oq9:w, 4oq9:x, 4oq9:y, 4oq9:z, 4oq9:1, 4oq9:2, 4oq9:3, 4oq9:4, 4oq9:5, 4oq9:6, 4oq9:7, 4oq9:8, 2vrt:E, 2vrt:F)
    uu
..
    		 ? GO:0000049 ... P0A6X3 28852099
    2 5new:B
    (2.511)    		 BS02 >5new:C (identical to 6a4e:B, 6a4e:D, 3af6:C, 6d30:C, 1ddl:E, 3er9:D, 4ht9:E, 3ie1:G, 3iem:M, 3iem:O, 3iem:P, 6j7z:C, 5kal:Y, 5kal:Z, 7m2t:t, 7m2t:u, 7m2t:v, 7m2t:w, 7m2t:x, 7m2t:y, 7m2t:z, 7m2t:1, 7m2t:2, 7m2t:3, 7m2t:4, 7m2t:5, 7m2t:6, 7m2t:8, 7m2t:ww, 7m2t:xx, 7m2t:yy, 7m2t:zz, 7m57:t, 7m57:u, 7m57:v, 7m57:x, 7m57:y, 7m57:z, 7m57:1, 7m57:2, 7m57:3, 7m57:4, 7m57:5, 7m57:6, 7m57:8, 7m57:ww, 7m57:xx, 7m57:yy, 4nia:t, 4nia:u, 4nia:v, 4nia:w, 4nia:x, 4nia:y, 4nia:z, 4nia:1, 4nia:2, 4nia:3, 4nia:4, 4nia:5, 4nia:6, 4nia:7, 4nia:8, 4oq8:D, 4oq9:t, 4oq9:u, 4oq9:v, 4oq9:w, 4oq9:x, 4oq9:y, 4oq9:z, 4oq9:1, 4oq9:2, 4oq9:3, 4oq9:4, 4oq9:5, 4oq9:6, 4oq9:7, 4oq9:8, 2vrt:E, 2vrt:F)
    uu
..
    		 ? GO:0000049 ... P0A6X3 28852099
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218