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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6uce:H
    (1.382)    		 BS01 >6uce:C (identical to 6cdo:C, 6cdp:C, 8eli:A, 5i8c:C, 6mqc:C, 6mqc:D, 6mqe:C, 6mqe:D, 6mqr:A, 6n16:E, 6n16:F, 6n16:G, 6n16:I, 6p60:E, 6p60:F, 6p60:I, 6p60:L, 6p7h:C, 6p8d:F, 6p8d:C, 6pdr:A, 6pds:C, 6pdu:C, 6pec:A, 6pef:C, 6pef:F, 8tdx:F, 8tdx:E, 5tkj:C, 5tkj:F, 5tkj:I, 5tkj:L, 5tkk:A, 6ubi:C, 6ubi:F, 6ucf:A, 6wwc:C, 6wwc:F, 6wx2:C, 6wx2:F)
    AVGIGAVF
    		 N/A N/A N/A 32130953
    2 6uce:L
    (1.382)    		 BS01 >6uce:C (identical to 6cdo:C, 6cdp:C, 8eli:A, 5i8c:C, 6mqc:C, 6mqc:D, 6mqe:C, 6mqe:D, 6mqr:A, 6n16:E, 6n16:F, 6n16:G, 6n16:I, 6p60:E, 6p60:F, 6p60:I, 6p60:L, 6p7h:C, 6p8d:F, 6p8d:C, 6pdr:A, 6pds:C, 6pdu:C, 6pec:A, 6pef:C, 6pef:F, 8tdx:F, 8tdx:E, 5tkj:C, 5tkj:F, 5tkj:I, 5tkj:L, 5tkk:A, 6ubi:C, 6ubi:F, 6ucf:A, 6wwc:C, 6wwc:F, 6wx2:C, 6wx2:F)
    AVGIGAVF
    		 ? GO:0005576 ... Q6GMX0 32130953
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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