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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 1g30:B
    (2.0)
    BS02 >1g30:C (identical to 1a2c:I, 5a2m:I, 1a46:I, 1a5g:I, 1a61:I, 1ad8:I, 1ae8:I, 1afe:I, 1aht:I, 1ai8:I, 1aix:I, 1awf:I, 4ax9:I, 1ay6:I, 1b5g:I, 4bam:D, 4ban:D, 4bao:D, 4baq:D, 1bcu:I, 2bdy:B, 3biu:I, 3biv:I, 1c5l:I, 1c5n:I, 2c8w:I, 2c8x:I, 2c8y:I, 2c8z:I, 2c90:I, 2c93:I, 1d6w:I, 1d9i:I, 1dwb:I, 1dwc:I, 1dwd:I, 6eo8:I, 1fpc:I, 1g32:C, 1h8d:I, 1h8i:I, 1hag:I, 1hah:I, 3hat:I, 1hgt:I, 2jh0:H, 2jh5:H, 2jh6:H, 1k21:I, 1k22:I, 7kme:I, 8kme:3, 1kts:C, 1ktt:C, 4loy:I, 4lxb:I, 1ny2:3, 3p17:I, 1qhr:I, 1qj1:I, 1qj6:I, 1qj7:I, 1riw:D, 6t3m:I, 6t3q:I, 6t4a:I, 6t54:I, 6t56:I, 1tbz:I, 1tmb:I, 1tmt:J, 1tom:I, 1uma:I, 2uuf:H, 2uuj:H, 2uuk:H, 1vr1:I, 3vxe:J, 3vxf:J, 1way:I, 1wbg:I, 1xm1:H, 6yn3:I, 1ype:I, 1ypg:I, 1ypj:I, 1ypk:I, 1ypl:I, 1ypm:I, 6ysj:I, 6ysx:I, 2zfp:I, 1zgi:B, 1zgv:B, 2zgx:I, 2zhe:I, 2zhf:I, 2zhw:I, 2ziq:I, 1zrb:B)
    DFEEIPEEYL
    3.4.21.5 GO:0004252 ... P00734 11342132

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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