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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8vms:A
    (1.42)    		 BS01 >8vms:C (identical to 1a74:C, 1a74:D, 1cyq:C, 1cyq:D, 1cz0:C, 1cz0:D, 1ipp:C, 1ipp:D, 2o6m:C, 2o6m:D, 8vmo:C, 8vmo:D, 8vmp:C, 8vmp:D, 8vmq:C, 8vmq:D, 8vmr:C, 8vmr:D, 8vms:D, 8vmt:C, 8vmt:D, 8vmu:C, 8vmu:D, 8vmw:C, 8vmw:D, 8vmx:C, 8vmx:D, 8vmy:C, 8vmy:D, 8vmz:C, 8vmz:D, 8vn0:C, 8vn0:D, 8vn1:C, 8vn1:D, 8vn2:C, 8vn2:D, 8vn5:C, 8vn5:D, 8vn6:C, 8vn6:D, 8vn8:C, 8vn8:D, 8vn9:C, 8vn9:D, 8vna:C, 8vna:D, 8vne:C, 8vne:D, 8vnf:C, 8vnf:D, 8vng:C, 8vng:D, 8vnh:C, 8vnh:D, 8vnj:C, 8vnj:D, 8vnk:C, 8vnk:D, 8vnm:C, 8vnm:D, 8vnp:C, 8vnp:D, 8vnq:C, 8vnq:D, 8vnr:C, 8vnr:D, 8vnu:C, 8vnu:D)
    ttgactctcttaagagagtca
    		 N/A GO:0004519 ... Q94702 N/A
    2 8vms:B
    (1.42)    		 BS01 >8vms:C (identical to 1a74:C, 1a74:D, 1cyq:C, 1cyq:D, 1cz0:C, 1cz0:D, 1ipp:C, 1ipp:D, 2o6m:C, 2o6m:D, 8vmo:C, 8vmo:D, 8vmp:C, 8vmp:D, 8vmq:C, 8vmq:D, 8vmr:C, 8vmr:D, 8vms:D, 8vmt:C, 8vmt:D, 8vmu:C, 8vmu:D, 8vmw:C, 8vmw:D, 8vmx:C, 8vmx:D, 8vmy:C, 8vmy:D, 8vmz:C, 8vmz:D, 8vn0:C, 8vn0:D, 8vn1:C, 8vn1:D, 8vn2:C, 8vn2:D, 8vn5:C, 8vn5:D, 8vn6:C, 8vn6:D, 8vn8:C, 8vn8:D, 8vn9:C, 8vn9:D, 8vna:C, 8vna:D, 8vne:C, 8vne:D, 8vnf:C, 8vnf:D, 8vng:C, 8vng:D, 8vnh:C, 8vnh:D, 8vnj:C, 8vnj:D, 8vnk:C, 8vnk:D, 8vnm:C, 8vnm:D, 8vnp:C, 8vnp:D, 8vnq:C, 8vnq:D, 8vnr:C, 8vnr:D, 8vnu:C, 8vnu:D)
    ttgactctcttaagagagtca
    		 N/A GO:0004519 ... Q94702 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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