BioLiP

Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag
uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag
ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua
agccagaaaccagucccaagaccgggugcccgu
<<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<...
............>>>>>>>><<<<<...<<<<....<<<<<<<<<.....
.>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<...........
>>>>.>..>>>>.>>>>.......>>>>>>...
gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag
uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag
ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua
agccagaaaccagucccaagaccgggugcccgu
<<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<...
............>>>>>>>><<<<<...<<<<....<<<<<<<<<.....
.>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<...........
>>>>.>..>>>>.>>>>.......>>>>>>...
gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag
uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag
ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua
agccagaaaccagucccaagaccgggugcccgu
<<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<...
............>>>>>>>><<<<<...<<<<....<<<<<<<<<.....
.>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<...........
>>>>.>..>>>>.>>>>.......>>>>>>...
gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag
uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag
ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua
agccagaaaccagucccaagaccgggugcccgu
<<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<...
............>>>>>>>><<<<<...<<<<....<<<<<<<<<.....
.>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<...........
>>>>.>..>>>>.>>>>.......>>>>>>...
gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag
uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag
ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua
agccagaaaccagucccaagaccgggugcccgu
<<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<...
............>>>>>>>><<<<<...<<<<....<<<<<<<<<.....
.>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<...........
>>>>.>..>>>>.>>>>.......>>>>>>...
gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag
uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag
ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua
agccagaaaccagucccaagaccgggugcccgu
<<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<...
............>>>>>>>><<<<<...<<<<....<<<<<<<<<.....
.>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<...........
>>>>.>..>>>>.>>>>.......>>>>>>...
gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag
uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag
ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua
agccagaaaccagucccaagaccgggugcccgu
<<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<...
............>>>>>>>><<<<<...<<<<....<<<<<<<<<.....
.>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<...........
>>>>.>..>>>>.>>>>.......>>>>>>...
gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag
uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag
ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua
agccagaaaccagucccaagaccgggugcccgu
<<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<...
............>>>>>>>><<<<<...<<<<....<<<<<<<<<.....
.>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<...........
>>>>.>..>>>>.>>>>.......>>>>>>...

#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	8ova:BO (2.47)	BS03	>8ova:BG (identical to 8ove:BG) gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua agccagaaaccagucccaagaccgggugcccgu <<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<... ............>>>>>>>><<<<<...<<<<....<<<<<<<<<..... .>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<........... >>>>.>..>>>>.>>>>.......>>>>>>...	?	GO:0003729 ...	Q585J5	37985661
2	8ova:BT (2.47)	BS04	>8ova:BG (identical to 8ove:BG) gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua agccagaaaccagucccaagaccgggugcccgu <<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<... ............>>>>>>>><<<<<...<<<<....<<<<<<<<<..... .>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<........... >>>>.>..>>>>.>>>>.......>>>>>>...	?	GO:0003723 ...	Q57ZI7	37985661
3	8ova:BW (2.47)	BS03	>8ova:BG (identical to 8ove:BG) gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua agccagaaaccagucccaagaccgggugcccgu <<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<... ............>>>>>>>><<<<<...<<<<....<<<<<<<<<..... .>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<........... >>>>.>..>>>>.>>>>.......>>>>>>...	?	GO:0003735 ...	Q38DP2	37985661
4	8ova:BY (2.47)	BS03	>8ova:BG (identical to 8ove:BG) gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua agccagaaaccagucccaagaccgggugcccgu <<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<... ............>>>>>>>><<<<<...<<<<....<<<<<<<<<..... .>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<........... >>>>.>..>>>>.>>>>.......>>>>>>...	?	GO:0002181 ...	Q38B56	37985661
5	8ova:Bf (2.47)	BS04	>8ova:BG (identical to 8ove:BG) gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua agccagaaaccagucccaagaccgggugcccgu <<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<... ............>>>>>>>><<<<<...<<<<....<<<<<<<<<..... .>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<........... >>>>.>..>>>>.>>>>.......>>>>>>...	?	GO:0003723 ...	Q581Q1	37985661
6	8ova:Bh (2.47)	BS04	>8ova:BG (identical to 8ove:BG) gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua agccagaaaccagucccaagaccgggugcccgu <<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<... ............>>>>>>>><<<<<...<<<<....<<<<<<<<<..... .>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<........... >>>>.>..>>>>.>>>>.......>>>>>>...	?	GO:0002181 ...	Q38DH8	37985661
7	8ova:Bs (2.47)	BS02	>8ova:BG (identical to 8ove:BG) gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua agccagaaaccagucccaagaccgggugcccgu <<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<... ............>>>>>>>><<<<<...<<<<....<<<<<<<<<..... .>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<........... >>>>.>..>>>>.>>>>.......>>>>>>...	?	GO:0003735 ...	P21899	37985661
8	8ova:By (2.47)	BS02	>8ova:BG (identical to 8ove:BG) gugagauugugaagggaucucgcaggcaucgugagggaaguaugggguag uacgagaggaacucccaugccgugccucugguuucuggaguuugucgaag ggcaagugcuccgacgcuaucgcacggugguucucggcugaacgccucua agccagaaaccagucccaagaccgggugcccgu <<<<<<<.........>>>>>>>.<<<<<<....<<<<.<<<<<<<<... ............>>>>>>>><<<<<...<<<<....<<<<<<<<<..... .>>>>..>>>>>...>>>>..>>>>>.<<<<..<.<<<<........... >>>>.>..>>>>.>>>>.......>>>>>>...	?	GO:0002181 ...	Q38CD0	37985661