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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8ova:AG
    (2.47)    		 BS03 >8ova:BE
    cuguggaaaugcgaaacacuugccaggugacccauccauccucccacggu
gagcuuucuuuucaccauaauccacuugggccucucgacuucucgcguua
cucggagcgggggcucaagauugaaaaaugcagcucacccuacguacugu
ugugaguucggcgcauuaaagcaaaaaccugggguguu
..<<<....>>>.....<<<..<<<<<<.......<<...<<<<...<<<
<<<.......>>>>>><...<<.<<<<<<<<<<<<........<<.....
..>>....>>>>>>>>>>>.>.>>....><<<<...<<.....>>.>>>>
.>.>>>...>>...............>>>>>>>>>...
    		 ? GO:0003735 ... Q586C2 37985661
    2 8ova:BT
    (2.47)    		 BS05 >8ova:BE
    cuguggaaaugcgaaacacuugccaggugacccauccauccucccacggu
gagcuuucuuuucaccauaauccacuugggccucucgacuucucgcguua
cucggagcgggggcucaagauugaaaaaugcagcucacccuacguacugu
ugugaguucggcgcauuaaagcaaaaaccugggguguu
..<<<....>>>.....<<<..<<<<<<.......<<...<<<<...<<<
<<<.......>>>>>><...<<.<<<<<<<<<<<<........<<.....
..>>....>>>>>>>>>>>.>.>>....><<<<...<<.....>>.>>>>
.>.>>>...>>...............>>>>>>>>>...
    		 ? GO:0003723 ... Q57ZI7 37985661
    3 8ova:BV
    (2.47)    		 BS03 >8ova:BE
    cuguggaaaugcgaaacacuugccaggugacccauccauccucccacggu
gagcuuucuuuucaccauaauccacuugggccucucgacuucucgcguua
cucggagcgggggcucaagauugaaaaaugcagcucacccuacguacugu
ugugaguucggcgcauuaaagcaaaaaccugggguguu
..<<<....>>>.....<<<..<<<<<<.......<<...<<<<...<<<
<<<.......>>>>>><...<<.<<<<<<<<<<<<........<<.....
..>>....>>>>>>>>>>>.>.>>....><<<<...<<.....>>.>>>>
.>.>>>...>>...............>>>>>>>>>...
    		 ? GO:0002181 ... Q383R3 37985661
    4 8ova:Ba
    (2.47)    		 BS02 >8ova:BE
    cuguggaaaugcgaaacacuugccaggugacccauccauccucccacggu
gagcuuucuuuucaccauaauccacuugggccucucgacuucucgcguua
cucggagcgggggcucaagauugaaaaaugcagcucacccuacguacugu
ugugaguucggcgcauuaaagcaaaaaccugggguguu
..<<<....>>>.....<<<..<<<<<<.......<<...<<<<...<<<
<<<.......>>>>>><...<<.<<<<<<<<<<<<........<<.....
..>>....>>>>>>>>>>>.>.>>....><<<<...<<.....>>.>>>>
.>.>>>...>>...............>>>>>>>>>...
    		 ? GO:0003735 ... Q381J6 37985661
    5 8ova:Be
    (2.47)    		 BS03 >8ova:BE
    cuguggaaaugcgaaacacuugccaggugacccauccauccucccacggu
gagcuuucuuuucaccauaauccacuugggccucucgacuucucgcguua
cucggagcgggggcucaagauugaaaaaugcagcucacccuacguacugu
ugugaguucggcgcauuaaagcaaaaaccugggguguu
..<<<....>>>.....<<<..<<<<<<.......<<...<<<<...<<<
<<<.......>>>>>><...<<.<<<<<<<<<<<<........<<.....
..>>....>>>>>>>>>>>.>.>>....><<<<...<<.....>>.>>>>
.>.>>>...>>...............>>>>>>>>>...
    		 ? GO:0002181 ... Q57W56 37985661
    6 8ova:Bg
    (2.47)    		 BS01 >8ova:BE
    cuguggaaaugcgaaacacuugccaggugacccauccauccucccacggu
gagcuuucuuuucaccauaauccacuugggccucucgacuucucgcguua
cucggagcgggggcucaagauugaaaaaugcagcucacccuacguacugu
ugugaguucggcgcauuaaagcaaaaaccugggguguu
..<<<....>>>.....<<<..<<<<<<.......<<...<<<<...<<<
<<<.......>>>>>><...<<.<<<<<<<<<<<<........<<.....
..>>....>>>>>>>>>>>.>.>>....><<<<...<<.....>>.>>>>
.>.>>>...>>...............>>>>>>>>>...
    		 ? GO:0003723 ... P49153 37985661
    7 8ova:Bj
    (2.47)    		 BS03 >8ova:BE
    cuguggaaaugcgaaacacuugccaggugacccauccauccucccacggu
gagcuuucuuuucaccauaauccacuugggccucucgacuucucgcguua
cucggagcgggggcucaagauugaaaaaugcagcucacccuacguacugu
ugugaguucggcgcauuaaagcaaaaaccugggguguu
..<<<....>>>.....<<<..<<<<<<.......<<...<<<<...<<<
<<<.......>>>>>><...<<.<<<<<<<<<<<<........<<.....
..>>....>>>>>>>>>>>.>.>>....><<<<...<<.....>>.>>>>
.>.>>>...>>...............>>>>>>>>>...
    		 ? GO:0003735 ... Q383V6 37985661
    8 8ova:Bo
    (2.47)    		 BS03 >8ova:BE
    cuguggaaaugcgaaacacuugccaggugacccauccauccucccacggu
gagcuuucuuuucaccauaauccacuugggccucucgacuucucgcguua
cucggagcgggggcucaagauugaaaaaugcagcucacccuacguacugu
ugugaguucggcgcauuaaagcaaaaaccugggguguu
..<<<....>>>.....<<<..<<<<<<.......<<...<<<<...<<<
<<<.......>>>>>><...<<.<<<<<<<<<<<<........<<.....
..>>....>>>>>>>>>>>.>.>>....><<<<...<<.....>>.>>>>
.>.>>>...>>...............>>>>>>>>>...
    		 ? GO:0003735 ... Q38AW9 37985661
    9 8ova:Bp
    (2.47)    		 BS02 >8ova:BE
    cuguggaaaugcgaaacacuugccaggugacccauccauccucccacggu
gagcuuucuuuucaccauaauccacuugggccucucgacuucucgcguua
cucggagcgggggcucaagauugaaaaaugcagcucacccuacguacugu
ugugaguucggcgcauuaaagcaaaaaccugggguguu
..<<<....>>>.....<<<..<<<<<<.......<<...<<<<...<<<
<<<.......>>>>>><...<<.<<<<<<<<<<<<........<<.....
..>>....>>>>>>>>>>>.>.>>....><<<<...<<.....>>.>>>>
.>.>>>...>>...............>>>>>>>>>...
    		 ? GO:0003735 ... Q38FV6 37985661
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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