BioLiP

Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed	Binding affinity
1	4v42:BX (5.5)	BS01	>4v42:BA (identical to 5a9z:AA, 5aa0:AA, 5imq:D, 5imr:D, 1ml5:a, 4v4x:BA, 4v4y:BA, 4v4z:BA) ggucaagaugguaagggcccacgguggaugccucggcacccgagccgaug aaggacguggcuaccugcgauaagccagggggagccgguagcgggcgugg aucccuggauguccgaaugggggaacccggccggcgggaacgccggucac cgcgcuuuugcgcggggggaaccuggggaacugaaacaucucaguaccca gaggagaggaaagagaaaucgacucccugaguagcggcgagcgaaagggg accagccuaaaccguccggcuuguccgggcggggucguggggcccucgga caccgaauccccagccuagccgaagcuguugggaagcagcgccagagagg gugaaagccccguaggcgaaagguggggggauaggugaggguacccgagu accccgugguucguggagccaugggggaaucugggcggaccaccgccuaa ggcuaaguacuccgggugaccgauagcgcaccaguaccgugagggaaagg ugaaaagaaccccgggaggggagugaaauagagccugaaaccgugggcuu acaagcagucacggccccgcaagggguuguggcgugccuauugaagcaug agccggcgacucacggucgugggcgagcuuaagccguugaggcggaggcg uagggaaaccgaguccgaacagggcgcaaaguccgcggccguggacccga aaccgggcgagcuagcccuggccagggugaagcuggggugagacccagug gaggcccgaaccggugggggaugcaaaccccucggaugagcuggggcuag gagugaaaagcuaaccgagcccggagauagcugguucuccccgaaaugac uuuagggucagccucaggcgcugacuggggccuguagagcacugauaggg cuagggggcccaccagccuaccaaacccugucaaacuccgaaggguccca gguggagccugggagugagggcgcgagcgauaacguccgcguccgagcgc gggaacaaccgagaccgccagcuaaggcccccaagucugggcuaaguggu aaaggauguggcgccgcgaagacagccaggagguuggcuuagaagcagcc auccuuuaaagagugcguaauagcucacuggucgaguggcgccgcgccga aaaugaugcggggcuuaagcccagcgccgaagcugcgggucugggggaug accccaggcgguaggggagcguucccgaugccgaugaaggccgacccgcg aggcggcuggagguaagggaagugcgaaugccggcaugaguaacgauaaa gagggugagaaucccucucgccguaagcccaaggguuccuacgcaauggu cgucagcguaggguuaggcgggaccuaaggugaagccgaaaggcguagcc gaagggcagccgguuaauauuccggcccuucccgcaggugcgaugggggg acgcucuaggcuagggggaccggagccauggacgagcccggccagaagcg cagggugggagguaggcaaauccgccucccaacaagcucugcgugguggg gaagcccguacgggugacaaccccccgaagccagggagccaagaaaagcc ucuaagcacaaccugcgggaacccguaccgcaaaccgacacaggugggcg ggugcaagagcacucaggcgcgcgggagaacccucgccaaggaacucugc aaguuggccccguaacuucgggagaaggggugcucccuggggugaugagc cccggggagccgcagugaacaggcucuggcgacuguuuaccaaaaacaca gcucucugcgaacucguaagaggagguauagggagcgacgcuugcccggu gccggaaggucaaggggaggggugcaagccccgaaccgaagccccgguga acggcggccguaacuauaacgguccuaagguagcgaaauuccuugucggg uaaguuccgaccugcacgaaaagcguaacgaccggagcgcugucucggcg agggacccggugaaauugaacuggccgugaagaugcggccuacccguggc aggacgaaaagaccccguggagcuuuacugcagccugguguuggcucuug gucgcgccugcguaggauaggugggagccugugaacccccgccuccgggu gggggggaggcgccggugaaauaccacccuggcgcggcugggggccuaac ccucggauggggggacagcgcuuggcgggcaguuugacuggggcggucgc cuccuaaaagguaacggaggcgcccaaagguccccucaggcgggacggaa auccgccggagagcgcaaggguagaagggggccugacugcgaggccugca agccgagcaggggcgaaagccgggccuagugaaccgguggucccgugugg aagggccaucgaucaacggauaaaaguuaccccggggauaacaggcugau cucccccgagcguccacagcggcggggagguuuggcaccucgaugucggc ucgucgcauccuggggcugaagaaggucccaaggguugggcuguucgccc auuaaagcggcacgcgagcuggguucagaacgucgugagacaguucgguc ucuauccgccacgggcgcaggaggcuugaggggggcucuuccuaguacga gaggaccggaagggacgcaccucugguuucccagcugucccuccaggggc auaagcuggguagccaugugcggaagggauaaccgcugaaagcaucuaag cgggaagcccgccccaagaugaggccucccacggcgucaagccgguaagg acccgggaagaccacccgguggaugggccggggguguaagcgccgcgagg cguugagccgaccggucccaaucguccgaggucuugacc <...<<<<.......<<<<<<<<<<...[<<<..<<<<<<<.<<....<. .[<<<<<<.{...((]>>>.....<<<<<<....<<))}....>>..... ..>>>>>>...>>>....<<.....>.><<<<<<<<.{..>>>>>>>>.< <<<<......>>>>>......(<<<<<<..[.<.....[>>.....>>>> >.>)....{...<.....>....<<<<<..........].].....>>>> >...<<<<..<<<<<<<<<.....>>>>>>>>......<<<.<<<..... .....<.<<<(..<<<(.<<.....<<<<......>>>>.........<< <.......>>>..).>>....>>>..>).>>>......>>>..>>>...> .<<<<<...<.......>}..>>>>>......<<<(......>.)>>..> >>>......>>{.>>>>>.>>....<...]>.....<<.<..>>....>> >........<<<.....>>>...................>>>>>>>>>>. ........<<<<<<<<<<.<..>>>>>>>>>>....<............. .><<<<<<...<<<<<<<<<<<<...<<<...<<<.....>>>..>>.>. ............<<<<.....>>>>......>>>>>>>>>>>>..<<.<. ..<<<<<.....<<<<<<<<<<..<<.<...<<<<<<......>>>>>>. ...>.>>...<<<<(<<...........>.>>>>>....>>>>>>>>>>< .<<....)..>>...>...>>>>>.}....>.>>...<<<<<....<<<< <....>>>>>.<{<<<<<<.....<<<<<<<<<...<<......<.<... ....<<<<<......>>>..>>....((>.>.....>>....>>>>>>>> >.....>>>>>>>.....<<<<<<<.<......<<>.>>>>>>>.....< <<......>>>...<<<<.<<<...<<<(((...{.<<<<<<.....).. <..<<.<<<<<<<<<<......<.<<<<<.<<...<<<<.....(.>>>> ...>>.....<...<<......>>>).>>>>>.>..>>>>>>>>>>>>.. ......[[.))..}.>..>>>>>>.>>>...>>>>>>>.<(.<<<..... .>>>.>)}.....>>>>>....(([....(........<<<<>....... .>>...>>.....)...)])........>>>>>><<...<..<<.....< <<<<<..(...(>>>>>><<<.....<<<[<.<<....<<<<<<..<<). ...>>>>>>>>......(<<<..<<<..<<<...<<<....>>>...>>> ..>>>[...<<<<........>>>>{).<<<<<<<<<<.<<...<<<<([ ..<<<<<....<.<<<<<...<<.<...........>>>..<<....<<. .<<<..<<<<<.<.<.....).>>]>>>>>......>]>>>>.....>>} ...<<<..)..]>>>......>>>>>>.......>>>>>.........>> >.>..>>....>>>>>>>>>>}>>>..>>......<...>..>.>.>>>. .<<<......>>>....>>>..<<<<....<<<<<<<..<<.......(. ...<...<<<<.....<....(.>..>>>><<<<<<<<<<<........> >>.>>>>>>>.>{.>.......<<<<<<<<<.)<......{......>.( <<[<<.<....<<<<....>>>....>.)>]>>.>>.<<<<<<.....<< <<.<<..<<<...<<[..<<<.......>>>....>>...>>>>>>.>.. >>...(<<<..........)>>>.........<<..........<<<<<< )....>>>>>>..>>..>...>>>>>..>>.>>>>>>>.....>>..>>> >>>>.>>>>>>....>>>.(..<<<<<....{.).>>>>>..<<<<<<<< .<<<.<<......<<<<..{.<<<..<<<<..<<<.<<<<<.<<<<.<.< <<<<<(.<...........<<(.<..<<.<....><<<<<<<<....>>> >>>>>....>>.....>......>>)....>>).>>>>>>..>>>>...< (.<......>>)...].>>>>>.>>>...>>>>.....>.>..<....<< .<<<...........>>>.>>..<<...[.<<<<....<<<<<<...... .>>>>>>))....<.....>.......>>>>.....<<<<..<<<..... .>>>..>>>>.<<<....>>>.>>..].<<.......<<<<<<....... ..>>>>>>.......>>.......>>>}....>>>>.....}.<<<<..< <<<<<<<..<<..(....>>>).>>>>>>>...>>>..>........<<< ....<<]].<<<<<<<<<......>>>>>>>..>>.<<<<<.....>>>> >......>>>>.......>..}.....<<<<<<<>...>>>.>>>>.... >>..>>>>>>>>>>>....<<<<<<<...<<<<...<<<<<<........ ...>...>>.>>>..<<<<<...<<<<...<<<<<<<<<<.....>>.>> >...>>>>>...>>>>.>>>>>...<<<.<..<<<<........<...>> >>>...>>>>.>>>>.......>>>>>>><.<<<<.....>>>>....<< .<.<<<<.......>>>>>....<<<<<<<<<<......<<<<......> >>>...}>>..>>>>>.>>>.....>>>...>>>>..>.	?	GO:0003735 ...	Q5SHQ6	11283358

PDB
(resolution)

Site
#

RNA
sequence

EC
number

GO
terms

UniProt

PubMed

Binding
affinity

4v42:BX
(5.5)

BS01

>4v42:BA (identical to 5a9z:AA, 5aa0:AA, 5imq:D, 5imr:D, 1ml5:a, 4v4x:BA, 4v4y:BA, 4v4z:BA)

ggucaagaugguaagggcccacgguggaugccucggcacccgagccgaug
aaggacguggcuaccugcgauaagccagggggagccgguagcgggcgugg
aucccuggauguccgaaugggggaacccggccggcgggaacgccggucac
cgcgcuuuugcgcggggggaaccuggggaacugaaacaucucaguaccca
gaggagaggaaagagaaaucgacucccugaguagcggcgagcgaaagggg
accagccuaaaccguccggcuuguccgggcggggucguggggcccucgga
caccgaauccccagccuagccgaagcuguugggaagcagcgccagagagg
gugaaagccccguaggcgaaagguggggggauaggugaggguacccgagu
accccgugguucguggagccaugggggaaucugggcggaccaccgccuaa
ggcuaaguacuccgggugaccgauagcgcaccaguaccgugagggaaagg
ugaaaagaaccccgggaggggagugaaauagagccugaaaccgugggcuu
acaagcagucacggccccgcaagggguuguggcgugccuauugaagcaug
agccggcgacucacggucgugggcgagcuuaagccguugaggcggaggcg
uagggaaaccgaguccgaacagggcgcaaaguccgcggccguggacccga
aaccgggcgagcuagcccuggccagggugaagcuggggugagacccagug
gaggcccgaaccggugggggaugcaaaccccucggaugagcuggggcuag
gagugaaaagcuaaccgagcccggagauagcugguucuccccgaaaugac
uuuagggucagccucaggcgcugacuggggccuguagagcacugauaggg
cuagggggcccaccagccuaccaaacccugucaaacuccgaaggguccca
gguggagccugggagugagggcgcgagcgauaacguccgcguccgagcgc
gggaacaaccgagaccgccagcuaaggcccccaagucugggcuaaguggu
aaaggauguggcgccgcgaagacagccaggagguuggcuuagaagcagcc
auccuuuaaagagugcguaauagcucacuggucgaguggcgccgcgccga
aaaugaugcggggcuuaagcccagcgccgaagcugcgggucugggggaug
accccaggcgguaggggagcguucccgaugccgaugaaggccgacccgcg
aggcggcuggagguaagggaagugcgaaugccggcaugaguaacgauaaa
gagggugagaaucccucucgccguaagcccaaggguuccuacgcaauggu
cgucagcguaggguuaggcgggaccuaaggugaagccgaaaggcguagcc
gaagggcagccgguuaauauuccggcccuucccgcaggugcgaugggggg
acgcucuaggcuagggggaccggagccauggacgagcccggccagaagcg
cagggugggagguaggcaaauccgccucccaacaagcucugcgugguggg
gaagcccguacgggugacaaccccccgaagccagggagccaagaaaagcc
ucuaagcacaaccugcgggaacccguaccgcaaaccgacacaggugggcg
ggugcaagagcacucaggcgcgcgggagaacccucgccaaggaacucugc
aaguuggccccguaacuucgggagaaggggugcucccuggggugaugagc
cccggggagccgcagugaacaggcucuggcgacuguuuaccaaaaacaca
gcucucugcgaacucguaagaggagguauagggagcgacgcuugcccggu
gccggaaggucaaggggaggggugcaagccccgaaccgaagccccgguga
acggcggccguaacuauaacgguccuaagguagcgaaauuccuugucggg
uaaguuccgaccugcacgaaaagcguaacgaccggagcgcugucucggcg
agggacccggugaaauugaacuggccgugaagaugcggccuacccguggc
aggacgaaaagaccccguggagcuuuacugcagccugguguuggcucuug
gucgcgccugcguaggauaggugggagccugugaacccccgccuccgggu
gggggggaggcgccggugaaauaccacccuggcgcggcugggggccuaac
ccucggauggggggacagcgcuuggcgggcaguuugacuggggcggucgc
cuccuaaaagguaacggaggcgcccaaagguccccucaggcgggacggaa
auccgccggagagcgcaaggguagaagggggccugacugcgaggccugca
agccgagcaggggcgaaagccgggccuagugaaccgguggucccgugugg
aagggccaucgaucaacggauaaaaguuaccccggggauaacaggcugau
cucccccgagcguccacagcggcggggagguuuggcaccucgaugucggc
ucgucgcauccuggggcugaagaaggucccaaggguugggcuguucgccc
auuaaagcggcacgcgagcuggguucagaacgucgugagacaguucgguc
ucuauccgccacgggcgcaggaggcuugaggggggcucuuccuaguacga
gaggaccggaagggacgcaccucugguuucccagcugucccuccaggggc
auaagcuggguagccaugugcggaagggauaaccgcugaaagcaucuaag
cgggaagcccgccccaagaugaggccucccacggcgucaagccgguaagg
acccgggaagaccacccgguggaugggccggggguguaagcgccgcgagg
cguugagccgaccggucccaaucguccgaggucuugacc
<...<<<<.......<<<<<<<<<<...[<<<..<<<<<<<.<<....<.
.[<<<<<<.{...((]>>>.....<<<<<<....<<))}....>>.....
..>>>>>>...>>>....<<.....>.><<<<<<<<.{..>>>>>>>>.<
<<<<......>>>>>......(<<<<<<..[.<.....[>>.....>>>>
>.>)....{...<.....>....<<<<<..........].].....>>>>
>...<<<<..<<<<<<<<<.....>>>>>>>>......<<<.<<<.....
.....<.<<<(..<<<(.<<.....<<<<......>>>>.........<<
<.......>>>..).>>....>>>..>).>>>......>>>..>>>...>
.<<<<<...<.......>}..>>>>>......<<<(......>.)>>..>
>>>......>>{.>>>>>.>>....<...]>.....<<.<..>>....>>
>........<<<.....>>>...................>>>>>>>>>>.
........<<<<<<<<<<.<..>>>>>>>>>>....<.............
.><<<<<<...<<<<<<<<<<<<...<<<...<<<.....>>>..>>.>.
............<<<<.....>>>>......>>>>>>>>>>>>..<<.<.
..<<<<<.....<<<<<<<<<<..<<.<...<<<<<<......>>>>>>.
...>.>>...<<<<(<<...........>.>>>>>....>>>>>>>>>><
.<<....)..>>...>...>>>>>.}....>.>>...<<<<<....<<<<
<....>>>>>.<{<<<<<<.....<<<<<<<<<...<<......<.<...
....<<<<<......>>>..>>....((>.>.....>>....>>>>>>>>
>.....>>>>>>>.....<<<<<<<.<......<<>.>>>>>>>.....<
<<......>>>...<<<<.<<<...<<<(((...{.<<<<<<.....)..
<..<<.<<<<<<<<<<......<.<<<<<.<<...<<<<.....(.>>>>
...>>.....<...<<......>>>).>>>>>.>..>>>>>>>>>>>>..
......[[.))..}.>..>>>>>>.>>>...>>>>>>>.<(.<<<.....
.>>>.>)}.....>>>>>....(([....(........<<<<>.......
.>>...>>.....)...)])........>>>>>><<...<..<<.....<
<<<<<..(...(>>>>>><<<.....<<<[<.<<....<<<<<<..<<).
...>>>>>>>>......(<<<..<<<..<<<...<<<....>>>...>>>
..>>>[...<<<<........>>>>{).<<<<<<<<<<.<<...<<<<([
..<<<<<....<.<<<<<...<<.<...........>>>..<<....<<.
.<<<..<<<<<.<.<.....).>>]>>>>>......>]>>>>.....>>}
...<<<..)..]>>>......>>>>>>.......>>>>>.........>>
>.>..>>....>>>>>>>>>>}>>>..>>......<...>..>.>.>>>.
.<<<......>>>....>>>..<<<<....<<<<<<<..<<.......(.
...<...<<<<.....<....(.>..>>>><<<<<<<<<<<........>
>>.>>>>>>>.>{.>.......<<<<<<<<<.)<......{......>.(
<<[<<.<....<<<<....>>>....>.)>]>>.>>.<<<<<<.....<<
<<.<<..<<<...<<[..<<<.......>>>....>>...>>>>>>.>..
>>...(<<<..........)>>>.........<<..........<<<<<<
)....>>>>>>..>>..>...>>>>>..>>.>>>>>>>.....>>..>>>
>>>>.>>>>>>....>>>.(..<<<<<....{.).>>>>>..<<<<<<<<
.<<<.<<......<<<<..{.<<<..<<<<..<<<.<<<<<.<<<<.<.<
<<<<<(.<...........<<(.<..<<.<....><<<<<<<<....>>>
>>>>>....>>.....>......>>)....>>).>>>>>>..>>>>...<
(.<......>>)...].>>>>>.>>>...>>>>.....>.>..<....<<
.<<<...........>>>.>>..<<...[.<<<<....<<<<<<......
.>>>>>>))....<.....>.......>>>>.....<<<<..<<<.....
.>>>..>>>>.<<<....>>>.>>..].<<.......<<<<<<.......
..>>>>>>.......>>.......>>>}....>>>>.....}.<<<<..<
<<<<<<<..<<..(....>>>).>>>>>>>...>>>..>........<<<
....<<]].<<<<<<<<<......>>>>>>>..>>.<<<<<.....>>>>
>......>>>>.......>..}.....<<<<<<<>...>>>.>>>>....
>>..>>>>>>>>>>>....<<<<<<<...<<<<...<<<<<<........
...>...>>.>>>..<<<<<...<<<<...<<<<<<<<<<.....>>.>>
>...>>>>>...>>>>.>>>>>...<<<.<..<<<<........<...>>
>>>...>>>>.>>>>.......>>>>>>><.<<<<.....>>>>....<<
.<.<<<<.......>>>>>....<<<<<<<<<<......<<<<......>
>>>...}>>..>>>>>.>>>.....>>>...>>>>..>.

GO:0003735 ...

Q5SHQ6

11283358