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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5zf0:A6 (4.2) BS44 SF4 1.97.1.12 GO:0000287 ... P0A405 29610537
    2 5zf0:A6 (4.2) BS45 CLA 1.97.1.12 GO:0000287 ... P0A405 29610537
    3 5zf0:A6 (4.2) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 29610537
    4 5zf0:A6 (4.2) BS47 CLA 1.97.1.12 GO:0000287 ... P0A405 29610537
    5 5zf0:A6 (4.2) BS48 CLA 1.97.1.12 GO:0000287 ... P0A405 29610537
    6 5zf0:A6 (4.2) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 29610537
    7 5zf0:A6 (4.2) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 29610537
    8 5zf0:B6 (4.2) BS01 peptide 1.97.1.12 GO:0000287 ... P0A407 29610537
    9 5zf0:B6 (4.2) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    10 5zf0:B6 (4.2) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    11 5zf0:B6 (4.2) BS04 SF4 1.97.1.12 GO:0000287 ... P0A407 29610537
    12 5zf0:B6 (4.2) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    13 5zf0:B6 (4.2) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    14 5zf0:B6 (4.2) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    15 5zf0:B6 (4.2) BS08 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    16 5zf0:B6 (4.2) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    17 5zf0:B6 (4.2) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    18 5zf0:B6 (4.2) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    19 5zf0:B6 (4.2) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    20 5zf0:B6 (4.2) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    21 5zf0:B6 (4.2) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    22 5zf0:B6 (4.2) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    23 5zf0:B6 (4.2) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    24 5zf0:B6 (4.2) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    25 5zf0:B6 (4.2) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    26 5zf0:B6 (4.2) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    27 5zf0:B6 (4.2) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    28 5zf0:B6 (4.2) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    29 5zf0:B6 (4.2) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    30 5zf0:B6 (4.2) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    31 5zf0:B6 (4.2) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    32 5zf0:B6 (4.2) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    33 5zf0:B6 (4.2) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    34 5zf0:B6 (4.2) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    35 5zf0:B6 (4.2) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    36 5zf0:B6 (4.2) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    37 5zf0:B6 (4.2) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    38 5zf0:B6 (4.2) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    39 5zf0:B6 (4.2) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    40 5zf0:B6 (4.2) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    41 5zf0:B6 (4.2) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    42 5zf0:B6 (4.2) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    43 5zf0:B6 (4.2) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    44 5zf0:B6 (4.2) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    45 5zf0:B6 (4.2) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    46 5zf0:B6 (4.2) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    47 5zf0:B6 (4.2) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    48 5zf0:B6 (4.2) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    49 5zf0:B6 (4.2) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    50 5zf0:B6 (4.2) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    51 5zf0:B6 (4.2) BS44 PQN 1.97.1.12 GO:0000287 ... P0A407 29610537
    52 5zf0:B6 (4.2) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    53 5zf0:B6 (4.2) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    54 5zf0:B6 (4.2) BS47 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    55 5zf0:B6 (4.2) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 29610537
    56 5zf0:F6 (4.2) BS02 CLA ? GO:0009522 ... P0A401 29610537
    57 5zf0:F6 (4.2) BS03 CLA ? GO:0009522 ... P0A401 29610537
    58 5zf0:F6 (4.2) BS04 CLA ? GO:0009522 ... P0A401 29610537
    59 5zf0:I6 (4.2) BS01 CLA ? GO:0009522 ... P0A427 29610537
    60 5zf0:I6 (4.2) BS02 CLA ? GO:0009522 ... P0A427 29610537
    61 5zf0:J6 (4.2) BS02 CLA ? GO:0009522 ... P0A429 29610537
    62 5zf0:L5 (4.2) BS04 CLA ? GO:0009522 ... Q8DGB4 29610537
    63 5zf0:L6 (4.2) BS04 CLA ? GO:0009522 ... Q8DGB4 29610537
    64 5zf0:L6 (4.2) BS05 CLA ? GO:0009522 ... Q8DGB4 29610537
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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