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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8wmw:A (3.3) BS54 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    2 8wmw:A (3.3) BS55 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    3 8wmw:A (3.3) BS56 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    4 8wmw:B (3.3) BS01 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    5 8wmw:B (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    6 8wmw:B (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    7 8wmw:B (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    8 8wmw:B (3.3) BS05 SF4 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    9 8wmw:B (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    10 8wmw:B (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    11 8wmw:B (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    12 8wmw:B (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    13 8wmw:B (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    14 8wmw:B (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    15 8wmw:B (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    16 8wmw:B (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    17 8wmw:B (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    18 8wmw:B (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    19 8wmw:B (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    20 8wmw:B (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    21 8wmw:B (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    22 8wmw:B (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    23 8wmw:B (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    24 8wmw:B (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    25 8wmw:B (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    26 8wmw:B (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    27 8wmw:B (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    28 8wmw:B (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    29 8wmw:B (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    30 8wmw:B (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    31 8wmw:B (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    32 8wmw:B (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    33 8wmw:B (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    34 8wmw:B (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    35 8wmw:B (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    36 8wmw:B (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    37 8wmw:B (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    38 8wmw:B (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    39 8wmw:B (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    40 8wmw:B (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    41 8wmw:B (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    42 8wmw:B (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    43 8wmw:B (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    44 8wmw:B (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    45 8wmw:B (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    46 8wmw:B (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    47 8wmw:B (3.3) BS44 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    48 8wmw:B (3.3) BS45 PQN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    49 8wmw:B (3.3) BS46 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    50 8wmw:B (3.3) BS47 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    51 8wmw:B (3.3) BS48 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    52 8wmw:B (3.3) BS49 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    53 8wmw:B (3.3) BS50 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    54 8wmw:B (3.3) BS51 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    55 8wmw:F (3.3) BS02 CLA ? N/A A6MVU7 38734819
    56 8wmw:F (3.3) BS03 CLA ? N/A A6MVU7 38734819
    57 8wmw:I (3.3) BS01 CLA ? GO:0009507 ... A6MVV1 38734819
    58 8wmw:I (3.3) BS02 CLA ? GO:0009507 ... A6MVV1 38734819
    59 8wmw:I (3.3) BS03 CLA ? GO:0009507 ... A6MVV1 38734819
    60 8wmw:J (3.3) BS03 CLA ? GO:0009507 ... A6MVU6 38734819
    61 8wmw:L (3.3) BS03 CLA ? GO:0009507 ... A6MVV8 38734819
    62 8wmw:L (3.3) BS04 CLA ? GO:0009507 ... A6MVV8 38734819
    63 8wmw:M (3.3) BS01 CLA ? GO:0009507 ... A6MVT4 38734819
    64 8wmw:R (3.3) BS01 CLA N/A N/A N/A 38734819
    65 8wmw:R (3.3) BS02 CLA N/A N/A N/A 38734819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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