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BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7y3f:1 (2.62) BS04 CLA ? GO:0009521 ... Q8YQ34 36805598
    2 7y3f:1 (2.62) BS05 CLA ? GO:0009521 ... Q8YQ34 36805598
    3 7y3f:A (2.62) BS46 CLA 1.97.1.12 GO:0000287 ... P58576 36805598
    4 7y3f:A (2.62) BS47 CLA 1.97.1.12 GO:0000287 ... P58576 36805598
    5 7y3f:A (2.62) BS48 CLA 1.97.1.12 GO:0000287 ... P58576 36805598
    6 7y3f:A (2.62) BS49 CLA 1.97.1.12 GO:0000287 ... P58576 36805598
    7 7y3f:B (2.62) BS01 peptide 1.97.1.12 GO:0000287 ... P58565 36805598
    8 7y3f:B (2.62) BS02 CL0 1.97.1.12 GO:0000287 ... P58565 36805598
    9 7y3f:B (2.62) BS03 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    10 7y3f:B (2.62) BS04 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    11 7y3f:B (2.62) BS05 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    12 7y3f:B (2.62) BS06 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    13 7y3f:B (2.62) BS07 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    14 7y3f:B (2.62) BS08 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    15 7y3f:B (2.62) BS09 SF4 1.97.1.12 GO:0000287 ... P58565 36805598
    16 7y3f:B (2.62) BS10 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    17 7y3f:B (2.62) BS11 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    18 7y3f:B (2.62) BS12 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    19 7y3f:B (2.62) BS13 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    20 7y3f:B (2.62) BS14 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    21 7y3f:B (2.62) BS15 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    22 7y3f:B (2.62) BS16 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    23 7y3f:B (2.62) BS17 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    24 7y3f:B (2.62) BS18 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    25 7y3f:B (2.62) BS19 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    26 7y3f:B (2.62) BS20 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    27 7y3f:B (2.62) BS21 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    28 7y3f:B (2.62) BS22 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    29 7y3f:B (2.62) BS23 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    30 7y3f:B (2.62) BS24 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    31 7y3f:B (2.62) BS25 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    32 7y3f:B (2.62) BS26 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    33 7y3f:B (2.62) BS27 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    34 7y3f:B (2.62) BS28 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    35 7y3f:B (2.62) BS29 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    36 7y3f:B (2.62) BS30 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    37 7y3f:B (2.62) BS31 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    38 7y3f:B (2.62) BS32 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    39 7y3f:B (2.62) BS33 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    40 7y3f:B (2.62) BS34 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    41 7y3f:B (2.62) BS35 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    42 7y3f:B (2.62) BS36 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    43 7y3f:B (2.62) BS37 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    44 7y3f:B (2.62) BS38 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    45 7y3f:B (2.62) BS39 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    46 7y3f:B (2.62) BS40 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    47 7y3f:B (2.62) BS41 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    48 7y3f:B (2.62) BS42 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    49 7y3f:B (2.62) BS43 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    50 7y3f:B (2.62) BS44 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    51 7y3f:B (2.62) BS45 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    52 7y3f:B (2.62) BS46 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    53 7y3f:B (2.62) BS47 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    54 7y3f:B (2.62) BS48 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    55 7y3f:B (2.62) BS49 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    56 7y3f:B (2.62) BS50 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    57 7y3f:B (2.62) BS51 PQN 1.97.1.12 GO:0000287 ... P58565 36805598
    58 7y3f:F (2.62) BS03 CLA ? GO:0009522 ... P58564 36805598
    59 7y3f:F (2.62) BS04 CLA ? GO:0009522 ... P58564 36805598
    60 7y3f:F (2.62) BS05 CLA ? GO:0009522 ... P58564 36805598
    61 7y3f:I (2.62) BS01 CLA ? GO:0009522 ... P58560 36805598
    62 7y3f:I (2.62) BS02 CLA ? GO:0009522 ... P58560 36805598
    63 7y3f:I (2.62) BS03 CLA ? GO:0009522 ... P58560 36805598
    64 7y3f:I (2.62) BS04 CLA ? GO:0009522 ... P58560 36805598
    65 7y3f:J (2.62) BS02 CLA ? GO:0009522 ... P58568 36805598
    66 7y3f:M (2.62) BS01 CLA ? GO:0009522 ... Q8YNB0 36805598
    67 7y3f:M (2.62) BS02 CLA ? GO:0009522 ... Q8YNB0 36805598
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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