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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6yez:1 (2.7) BS01 CLA N/A GO:0009765 ... N/A 33020607
    2 6yez:A (2.7) BS46 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    3 6yez:A (2.7) BS47 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    4 6yez:A (2.7) BS48 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    5 6yez:A (2.7) BS49 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    6 6yez:B (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    7 6yez:B (2.7) BS02 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    8 6yez:B (2.7) BS03 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    9 6yez:B (2.7) BS04 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    10 6yez:B (2.7) BS05 SF4 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    11 6yez:B (2.7) BS06 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    12 6yez:B (2.7) BS07 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    13 6yez:B (2.7) BS08 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    14 6yez:B (2.7) BS09 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    15 6yez:B (2.7) BS10 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    16 6yez:B (2.7) BS11 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    17 6yez:B (2.7) BS12 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    18 6yez:B (2.7) BS13 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    19 6yez:B (2.7) BS14 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    20 6yez:B (2.7) BS15 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    21 6yez:B (2.7) BS16 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    22 6yez:B (2.7) BS17 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    23 6yez:B (2.7) BS18 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    24 6yez:B (2.7) BS19 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    25 6yez:B (2.7) BS20 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    26 6yez:B (2.7) BS21 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    27 6yez:B (2.7) BS22 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    28 6yez:B (2.7) BS23 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    29 6yez:B (2.7) BS24 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    30 6yez:B (2.7) BS25 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    31 6yez:B (2.7) BS26 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    32 6yez:B (2.7) BS27 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    33 6yez:B (2.7) BS28 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    34 6yez:B (2.7) BS29 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    35 6yez:B (2.7) BS30 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    36 6yez:B (2.7) BS31 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    37 6yez:B (2.7) BS32 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    38 6yez:B (2.7) BS33 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    39 6yez:B (2.7) BS34 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    40 6yez:B (2.7) BS35 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    41 6yez:B (2.7) BS36 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    42 6yez:B (2.7) BS37 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    43 6yez:B (2.7) BS38 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    44 6yez:B (2.7) BS39 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    45 6yez:B (2.7) BS40 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    46 6yez:B (2.7) BS41 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    47 6yez:B (2.7) BS42 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    48 6yez:B (2.7) BS43 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    49 6yez:B (2.7) BS44 PQN 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    50 6yez:B (2.7) BS45 CA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    51 6yez:B (2.7) BS46 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    52 6yez:B (2.7) BS47 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    53 6yez:F (2.7) BS02 CLA ? GO:0009507 ... A0A0M3KL12 33020607
    54 6yez:F (2.7) BS03 CLA ? GO:0009507 ... A0A0M3KL12 33020607
    55 6yez:G (2.7) BS01 CLA N/A GO:0009522 ... N/A 33020607
    56 6yez:H (2.7) BS01 CLA ? GO:0009507 ... A0A0M3KL10 33020607
    57 6yez:I (2.7) BS01 CLA ? GO:0009522 ... P17227 33020607
    58 6yez:I (2.7) BS02 CLA ? GO:0009522 ... P17227 33020607
    59 6yez:I (2.7) BS03 CLA ? GO:0009522 ... P17227 33020607
    60 6yez:J (2.7) BS02 CLA ? GO:0009507 ... D5MAL3 33020607
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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