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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6l4u:1 (2.4) BS01 CLA N/A GO:0009765 ... N/A N/A
    2 6l4u:1 (2.4) BS02 CLA N/A GO:0009765 ... N/A N/A
    3 6l4u:2 (2.4) BS01 CLA N/A GO:0009765 ... N/A N/A
    4 6l4u:2u (2.4) BS01 CLA N/A N/A N/A N/A
    5 6l4u:2u (2.4) BS02 CLA N/A N/A N/A N/A
    6 6l4u:4 (2.4) BS01 CLA N/A GO:0009765 ... N/A N/A
    7 6l4u:A (2.4) BS47 CLA N/A GO:0009579 ... N/A N/A
    8 6l4u:A (2.4) BS48 CLA N/A GO:0009579 ... N/A N/A
    9 6l4u:A (2.4) BS49 CLA N/A GO:0009579 ... N/A N/A
    10 6l4u:A (2.4) BS50 CLA N/A GO:0009579 ... N/A N/A
    11 6l4u:B (2.4) BS01 CL0 N/A GO:0009522 ... N/A N/A
    12 6l4u:B (2.4) BS02 CLA N/A GO:0009522 ... N/A N/A
    13 6l4u:B (2.4) BS03 CLA N/A GO:0009522 ... N/A N/A
    14 6l4u:B (2.4) BS04 CLA N/A GO:0009522 ... N/A N/A
    15 6l4u:B (2.4) BS05 CLA N/A GO:0009522 ... N/A N/A
    16 6l4u:B (2.4) BS06 CLA N/A GO:0009522 ... N/A N/A
    17 6l4u:B (2.4) BS07 SF4 N/A GO:0009522 ... N/A N/A
    18 6l4u:B (2.4) BS08 CLA N/A GO:0009522 ... N/A N/A
    19 6l4u:B (2.4) BS09 CLA N/A GO:0009522 ... N/A N/A
    20 6l4u:B (2.4) BS10 CLA N/A GO:0009522 ... N/A N/A
    21 6l4u:B (2.4) BS11 CLA N/A GO:0009522 ... N/A N/A
    22 6l4u:B (2.4) BS12 CLA N/A GO:0009522 ... N/A N/A
    23 6l4u:B (2.4) BS13 CLA N/A GO:0009522 ... N/A N/A
    24 6l4u:B (2.4) BS14 CLA N/A GO:0009522 ... N/A N/A
    25 6l4u:B (2.4) BS15 CLA N/A GO:0009522 ... N/A N/A
    26 6l4u:B (2.4) BS16 CLA N/A GO:0009522 ... N/A N/A
    27 6l4u:B (2.4) BS17 CLA N/A GO:0009522 ... N/A N/A
    28 6l4u:B (2.4) BS18 CLA N/A GO:0009522 ... N/A N/A
    29 6l4u:B (2.4) BS19 CLA N/A GO:0009522 ... N/A N/A
    30 6l4u:B (2.4) BS20 CLA N/A GO:0009522 ... N/A N/A
    31 6l4u:B (2.4) BS21 CLA N/A GO:0009522 ... N/A N/A
    32 6l4u:B (2.4) BS22 CLA N/A GO:0009522 ... N/A N/A
    33 6l4u:B (2.4) BS23 CLA N/A GO:0009522 ... N/A N/A
    34 6l4u:B (2.4) BS24 CLA N/A GO:0009522 ... N/A N/A
    35 6l4u:B (2.4) BS25 CLA N/A GO:0009522 ... N/A N/A
    36 6l4u:B (2.4) BS26 CLA N/A GO:0009522 ... N/A N/A
    37 6l4u:B (2.4) BS27 CLA N/A GO:0009522 ... N/A N/A
    38 6l4u:B (2.4) BS28 CLA N/A GO:0009522 ... N/A N/A
    39 6l4u:B (2.4) BS29 CLA N/A GO:0009522 ... N/A N/A
    40 6l4u:B (2.4) BS30 CLA N/A GO:0009522 ... N/A N/A
    41 6l4u:B (2.4) BS31 CLA N/A GO:0009522 ... N/A N/A
    42 6l4u:B (2.4) BS32 CLA N/A GO:0009522 ... N/A N/A
    43 6l4u:B (2.4) BS33 CLA N/A GO:0009522 ... N/A N/A
    44 6l4u:B (2.4) BS34 CLA N/A GO:0009522 ... N/A N/A
    45 6l4u:B (2.4) BS35 CLA N/A GO:0009522 ... N/A N/A
    46 6l4u:B (2.4) BS36 CLA N/A GO:0009522 ... N/A N/A
    47 6l4u:B (2.4) BS37 CLA N/A GO:0009522 ... N/A N/A
    48 6l4u:B (2.4) BS38 CLA N/A GO:0009522 ... N/A N/A
    49 6l4u:B (2.4) BS39 CLA N/A GO:0009522 ... N/A N/A
    50 6l4u:B (2.4) BS40 CLA N/A GO:0009522 ... N/A N/A
    51 6l4u:B (2.4) BS41 CLA N/A GO:0009522 ... N/A N/A
    52 6l4u:B (2.4) BS42 CLA N/A GO:0009522 ... N/A N/A
    53 6l4u:B (2.4) BS43 CLA N/A GO:0009522 ... N/A N/A
    54 6l4u:B (2.4) BS44 CLA N/A GO:0009522 ... N/A N/A
    55 6l4u:B (2.4) BS45 CLA N/A GO:0009522 ... N/A N/A
    56 6l4u:B (2.4) BS46 CLA N/A GO:0009522 ... N/A N/A
    57 6l4u:B (2.4) BS47 PQN N/A GO:0009522 ... N/A N/A
    58 6l4u:B (2.4) BS48 CLA N/A GO:0009522 ... N/A N/A
    59 6l4u:B (2.4) BS49 CLA N/A GO:0009522 ... N/A N/A
    60 6l4u:B (2.4) BS50 CLA N/A GO:0009522 ... N/A N/A
    61 6l4u:B (2.4) BS51 CLA N/A GO:0009522 ... N/A N/A
    62 6l4u:F (2.4) BS02 CLA N/A GO:0009522 ... N/A N/A
    63 6l4u:F (2.4) BS03 CLA N/A GO:0009522 ... N/A N/A
    64 6l4u:I (2.4) BS01 CLA N/A GO:0009522 ... N/A N/A
    65 6l4u:I (2.4) BS02 CLA N/A GO:0009522 ... N/A N/A
    66 6l4u:I (2.4) BS03 CLA N/A GO:0009522 ... N/A N/A
    67 6l4u:J (2.4) BS03 CLA N/A GO:0009522 ... N/A N/A
    68 6l4u:L (2.4) BS04 CLA N/A GO:0009522 ... N/A N/A
    69 6l4u:L (2.4) BS05 CLA N/A GO:0009522 ... N/A N/A
    70 6l4u:M (2.4) BS01 CLA N/A GO:0015979 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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