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BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7dwq:A (3.3) BS47 CL7 1.97.1.12 GO:0000287 ... B0C474 34002536
    2 7dwq:A (3.3) BS48 CL7 1.97.1.12 GO:0000287 ... B0C474 34002536
    3 7dwq:A (3.3) BS49 PHO 1.97.1.12 GO:0000287 ... B0C474 34002536
    4 7dwq:B (3.3) BS01 peptide 1.97.1.12 GO:0000287 ... B0C475 34002536
    5 7dwq:B (3.3) BS02 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    6 7dwq:B (3.3) BS03 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    7 7dwq:B (3.3) BS04 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    8 7dwq:B (3.3) BS05 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    9 7dwq:B (3.3) BS06 SF4 1.97.1.12 GO:0000287 ... B0C475 34002536
    10 7dwq:B (3.3) BS07 PHO 1.97.1.12 GO:0000287 ... B0C475 34002536
    11 7dwq:B (3.3) BS08 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    12 7dwq:B (3.3) BS09 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    13 7dwq:B (3.3) BS10 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    14 7dwq:B (3.3) BS11 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    15 7dwq:B (3.3) BS12 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    16 7dwq:B (3.3) BS13 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    17 7dwq:B (3.3) BS14 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    18 7dwq:B (3.3) BS15 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    19 7dwq:B (3.3) BS16 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    20 7dwq:B (3.3) BS17 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    21 7dwq:B (3.3) BS18 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    22 7dwq:B (3.3) BS19 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    23 7dwq:B (3.3) BS20 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    24 7dwq:B (3.3) BS21 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    25 7dwq:B (3.3) BS22 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    26 7dwq:B (3.3) BS23 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    27 7dwq:B (3.3) BS24 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    28 7dwq:B (3.3) BS25 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    29 7dwq:B (3.3) BS26 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    30 7dwq:B (3.3) BS27 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    31 7dwq:B (3.3) BS28 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    32 7dwq:B (3.3) BS29 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    33 7dwq:B (3.3) BS30 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    34 7dwq:B (3.3) BS31 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    35 7dwq:B (3.3) BS32 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    36 7dwq:B (3.3) BS33 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    37 7dwq:B (3.3) BS34 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    38 7dwq:B (3.3) BS35 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    39 7dwq:B (3.3) BS36 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    40 7dwq:B (3.3) BS37 PQN 1.97.1.12 GO:0000287 ... B0C475 34002536
    41 7dwq:B (3.3) BS38 PHO 1.97.1.12 GO:0000287 ... B0C475 34002536
    42 7dwq:B (3.3) BS39 8CT 1.97.1.12 GO:0000287 ... B0C475 34002536
    43 7dwq:B (3.3) BS40 8CT 1.97.1.12 GO:0000287 ... B0C475 34002536
    44 7dwq:B (3.3) BS41 8CT 1.97.1.12 GO:0000287 ... B0C475 34002536
    45 7dwq:B (3.3) BS42 8CT 1.97.1.12 GO:0000287 ... B0C475 34002536
    46 7dwq:B (3.3) BS43 CL7 1.97.1.12 GO:0000287 ... B0C475 34002536
    47 7dwq:F (3.3) BS01 CL7 ? GO:0009522 ... B0C7S7 34002536
    48 7dwq:F (3.3) BS02 CL7 ? GO:0009522 ... B0C7S7 34002536
    49 7dwq:L (3.3) BS03 CL7 ? GO:0009522 ... B0C7S4 34002536
    50 7dwq:M (3.3) BS01 CL7 ? GO:0009522 ... B0C4H4 34002536
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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