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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5zgb:A (3.63) BS43 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    2 5zgb:A (3.63) BS44 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    3 5zgb:A (3.63) BS45 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    4 5zgb:A (3.63) BS46 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    5 5zgb:A (3.63) BS47 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    6 5zgb:A (3.63) BS48 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    7 5zgb:A (3.63) BS49 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    8 5zgb:B (3.63) BS01 peptide 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    9 5zgb:B (3.63) BS02 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    10 5zgb:B (3.63) BS03 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    11 5zgb:B (3.63) BS04 SF4 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    12 5zgb:B (3.63) BS05 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    13 5zgb:B (3.63) BS06 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    14 5zgb:B (3.63) BS07 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    15 5zgb:B (3.63) BS08 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    16 5zgb:B (3.63) BS09 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    17 5zgb:B (3.63) BS10 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    18 5zgb:B (3.63) BS11 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    19 5zgb:B (3.63) BS12 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    20 5zgb:B (3.63) BS13 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    21 5zgb:B (3.63) BS14 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    22 5zgb:B (3.63) BS15 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    23 5zgb:B (3.63) BS16 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    24 5zgb:B (3.63) BS17 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    25 5zgb:B (3.63) BS18 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    26 5zgb:B (3.63) BS19 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    27 5zgb:B (3.63) BS20 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    28 5zgb:B (3.63) BS21 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    29 5zgb:B (3.63) BS22 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    30 5zgb:B (3.63) BS23 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    31 5zgb:B (3.63) BS24 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    32 5zgb:B (3.63) BS25 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    33 5zgb:B (3.63) BS26 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    34 5zgb:B (3.63) BS27 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    35 5zgb:B (3.63) BS28 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    36 5zgb:B (3.63) BS29 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    37 5zgb:B (3.63) BS30 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    38 5zgb:B (3.63) BS31 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    39 5zgb:B (3.63) BS32 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    40 5zgb:B (3.63) BS33 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    41 5zgb:B (3.63) BS34 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    42 5zgb:B (3.63) BS35 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    43 5zgb:B (3.63) BS36 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    44 5zgb:B (3.63) BS37 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    45 5zgb:B (3.63) BS38 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    46 5zgb:B (3.63) BS39 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    47 5zgb:B (3.63) BS40 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    48 5zgb:B (3.63) BS41 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    49 5zgb:B (3.63) BS42 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    50 5zgb:B (3.63) BS43 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    51 5zgb:B (3.63) BS44 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    52 5zgb:B (3.63) BS45 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    53 5zgb:B (3.63) BS46 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    54 5zgb:B (3.63) BS47 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    55 5zgb:B (3.63) BS48 PQN 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    56 5zgb:B (3.63) BS49 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    57 5zgb:F (3.63) BS01 CLA ? GO:0009522 ... Q85FS9 29632169
    58 5zgb:F (3.63) BS02 CLA ? GO:0009522 ... Q85FS9 29632169
    59 5zgb:F (3.63) BS03 CLA ? GO:0009522 ... Q85FS9 29632169
    60 5zgb:I (3.63) BS01 CLA ? GO:0009507 ... Q85FQ6 29632169
    61 5zgb:I (3.63) BS02 CLA ? GO:0009507 ... Q85FQ6 29632169
    62 5zgb:I (3.63) BS03 CLA ? GO:0009507 ... Q85FQ6 29632169
    63 5zgb:L (3.63) BS03 CLA ? GO:0009507 ... Q85FP8 29632169
    64 5zgb:L (3.63) BS04 CLA ? GO:0009507 ... Q85FP8 29632169
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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