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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3pcq:A (8.984) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 21293373
    2 3pcq:A (8.984) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 21293373
    3 3pcq:A (8.984) BS51 CLA 1.97.1.12 GO:0000287 ... P0A405 21293373
    4 3pcq:A (8.984) BS52 CLA 1.97.1.12 GO:0000287 ... P0A405 21293373
    5 3pcq:B (8.984) BS01 peptide 1.97.1.12 GO:0000287 ... P0A407 21293373
    6 3pcq:B (8.984) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    7 3pcq:B (8.984) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    8 3pcq:B (8.984) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    9 3pcq:B (8.984) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    10 3pcq:B (8.984) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    11 3pcq:B (8.984) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    12 3pcq:B (8.984) BS08 SF4 1.97.1.12 GO:0000287 ... P0A407 21293373
    13 3pcq:B (8.984) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    14 3pcq:B (8.984) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    15 3pcq:B (8.984) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    16 3pcq:B (8.984) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    17 3pcq:B (8.984) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    18 3pcq:B (8.984) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    19 3pcq:B (8.984) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    20 3pcq:B (8.984) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    21 3pcq:B (8.984) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    22 3pcq:B (8.984) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    23 3pcq:B (8.984) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    24 3pcq:B (8.984) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    25 3pcq:B (8.984) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    26 3pcq:B (8.984) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    27 3pcq:B (8.984) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    28 3pcq:B (8.984) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    29 3pcq:B (8.984) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    30 3pcq:B (8.984) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    31 3pcq:B (8.984) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    32 3pcq:B (8.984) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    33 3pcq:B (8.984) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    34 3pcq:B (8.984) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    35 3pcq:B (8.984) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    36 3pcq:B (8.984) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    37 3pcq:B (8.984) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    38 3pcq:B (8.984) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    39 3pcq:B (8.984) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    40 3pcq:B (8.984) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    41 3pcq:B (8.984) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    42 3pcq:B (8.984) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    43 3pcq:B (8.984) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    44 3pcq:B (8.984) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    45 3pcq:B (8.984) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    46 3pcq:B (8.984) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    47 3pcq:B (8.984) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    48 3pcq:B (8.984) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    49 3pcq:B (8.984) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    50 3pcq:B (8.984) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    51 3pcq:B (8.984) BS47 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    52 3pcq:B (8.984) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    53 3pcq:B (8.984) BS49 PQN 1.97.1.12 GO:0000287 ... P0A407 21293373
    54 3pcq:F (8.984) BS02 CLA ? GO:0009522 ... P0A401 21293373
    55 3pcq:I (8.984) BS01 CLA ? GO:0009522 ... P0A427 21293373
    56 3pcq:I (8.984) BS02 CLA ? GO:0009522 ... P0A427 21293373
    57 3pcq:I (8.984) BS03 CLA ? GO:0009522 ... P0A427 21293373
    58 3pcq:I (8.984) BS04 CLA ? GO:0009522 ... P0A427 21293373
    59 3pcq:J (8.984) BS04 CLA ? GO:0009522 ... P0A429 21293373
    60 3pcq:L (8.984) BS03 CLA ? GO:0009522 ... Q8DGB4 21293373
    61 3pcq:M (8.984) BS01 CLA ? GO:0009522 ... P0A403 21293373
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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