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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3lw5:A (3.3) BS46 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    2 3lw5:B (3.3) BS01 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    3 3lw5:B (3.3) BS02 SF4 1.97.1.12 GO:0000287 ... P05311 19923216
    4 3lw5:B (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    5 3lw5:B (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    6 3lw5:B (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    7 3lw5:B (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    8 3lw5:B (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    9 3lw5:B (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    10 3lw5:B (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    11 3lw5:B (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    12 3lw5:B (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    13 3lw5:B (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    14 3lw5:B (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    15 3lw5:B (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    16 3lw5:B (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    17 3lw5:B (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    18 3lw5:B (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    19 3lw5:B (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    20 3lw5:B (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    21 3lw5:B (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    22 3lw5:B (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    23 3lw5:B (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    24 3lw5:B (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    25 3lw5:B (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    26 3lw5:B (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    27 3lw5:B (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    28 3lw5:B (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    29 3lw5:B (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    30 3lw5:B (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    31 3lw5:B (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    32 3lw5:B (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    33 3lw5:B (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    34 3lw5:B (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    35 3lw5:B (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    36 3lw5:B (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    37 3lw5:B (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    38 3lw5:B (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    39 3lw5:B (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    40 3lw5:B (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    41 3lw5:B (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    42 3lw5:B (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    43 3lw5:B (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    44 3lw5:B (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    45 3lw5:B (3.3) BS44 PQN 1.97.1.12 GO:0000287 ... P05311 19923216
    46 3lw5:B (3.3) BS45 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    47 3lw5:B (3.3) BS46 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    48 3lw5:B (3.3) BS47 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    49 3lw5:F (3.3) BS02 CLA ? GO:0009522 ... P12355 19923216
    50 3lw5:F (3.3) BS03 CLA ? GO:0009522 ... P12355 19923216
    51 3lw5:G (3.3) BS01 CLA ? GO:0009522 ... P20120 19923216
    52 3lw5:I (3.3) BS01 CLA ? GO:0009522 ... P17227 19923216
    53 3lw5:I (3.3) BS02 CLA ? GO:0009522 ... P17227 19923216
    54 3lw5:J (3.3) BS01 CLA ? GO:0009522 ... E1C9L0 19923216
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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