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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ksq:A (2.8) BS47 CLA 1.97.1.12 GO:0000287 ... Q8MFA3 35190662
    2 7ksq:A (2.8) BS48 CLA 1.97.1.12 GO:0000287 ... Q8MFA3 35190662
    3 7ksq:A (2.8) BS49 CLA 1.97.1.12 GO:0000287 ... Q8MFA3 35190662
    4 7ksq:A (2.8) BS50 CLA 1.97.1.12 GO:0000287 ... Q8MFA3 35190662
    5 7ksq:A (2.8) BS51 CLA 1.97.1.12 GO:0000287 ... Q8MFA3 35190662
    6 7ksq:B (2.8) BS01 CL0 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    7 7ksq:B (2.8) BS02 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    8 7ksq:B (2.8) BS03 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    9 7ksq:B (2.8) BS04 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    10 7ksq:B (2.8) BS05 SF4 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    11 7ksq:B (2.8) BS06 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    12 7ksq:B (2.8) BS07 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    13 7ksq:B (2.8) BS08 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    14 7ksq:B (2.8) BS09 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    15 7ksq:B (2.8) BS10 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    16 7ksq:B (2.8) BS11 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    17 7ksq:B (2.8) BS12 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    18 7ksq:B (2.8) BS13 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    19 7ksq:B (2.8) BS14 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    20 7ksq:B (2.8) BS15 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    21 7ksq:B (2.8) BS16 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    22 7ksq:B (2.8) BS17 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    23 7ksq:B (2.8) BS18 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    24 7ksq:B (2.8) BS19 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    25 7ksq:B (2.8) BS20 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    26 7ksq:B (2.8) BS21 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    27 7ksq:B (2.8) BS22 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    28 7ksq:B (2.8) BS23 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    29 7ksq:B (2.8) BS24 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    30 7ksq:B (2.8) BS25 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    31 7ksq:B (2.8) BS26 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    32 7ksq:B (2.8) BS27 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    33 7ksq:B (2.8) BS28 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    34 7ksq:B (2.8) BS29 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    35 7ksq:B (2.8) BS30 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    36 7ksq:B (2.8) BS31 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    37 7ksq:B (2.8) BS32 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    38 7ksq:B (2.8) BS33 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    39 7ksq:B (2.8) BS34 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    40 7ksq:B (2.8) BS35 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    41 7ksq:B (2.8) BS36 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    42 7ksq:B (2.8) BS37 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    43 7ksq:B (2.8) BS38 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    44 7ksq:B (2.8) BS39 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    45 7ksq:B (2.8) BS40 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    46 7ksq:B (2.8) BS41 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    47 7ksq:B (2.8) BS42 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    48 7ksq:B (2.8) BS43 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    49 7ksq:B (2.8) BS44 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    50 7ksq:B (2.8) BS45 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    51 7ksq:B (2.8) BS46 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    52 7ksq:B (2.8) BS47 PQN 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    53 7ksq:B (2.8) BS48 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    54 7ksq:B (2.8) BS49 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    55 7ksq:B (2.8) BS50 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    56 7ksq:B (2.8) BS51 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    57 7ksq:F (2.8) BS03 CLA ? GO:0009522 ... A0A2K1IN36 35190662
    58 7ksq:F (2.8) BS04 CLA ? GO:0009522 ... A0A2K1IN36 35190662
    59 7ksq:F (2.8) BS05 CLA ? GO:0009522 ... A0A2K1IN36 35190662
    60 7ksq:G (2.8) BS01 CLA ? GO:0009522 ... A0A2K1JC42 35190662
    61 7ksq:G (2.8) BS02 CLA ? GO:0009522 ... A0A2K1JC42 35190662
    62 7ksq:I (2.8) BS01 CLA ? GO:0009507 ... Q6YXR3 35190662
    63 7ksq:J (2.8) BS02 CLA ? GO:0009507 ... Q6YXM2 35190662
    64 7ksq:L (2.8) BS04 CLA ? GO:0009522 ... A0A2K1KIF2 35190662
    65 7ksq:L (2.8) BS05 CLA ? GO:0009522 ... A0A2K1KIF2 35190662
    66 7ksq:M (2.8) BS01 CLA ? GO:0009507 ... Q6YXK4 35190662
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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