Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8j6z:A (2.79) BS45 CLA 1.97.1.12 GO:0000287 ... P56766 37936349
    2 8j6z:A (2.79) BS46 CLA 1.97.1.12 GO:0000287 ... P56766 37936349
    3 8j6z:A (2.79) BS47 CLA 1.97.1.12 GO:0000287 ... P56766 37936349
    4 8j6z:B (2.79) BS01 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    5 8j6z:B (2.79) BS02 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    6 8j6z:B (2.79) BS03 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    7 8j6z:B (2.79) BS04 SF4 1.97.1.12 GO:0000287 ... P56767 37936349
    8 8j6z:B (2.79) BS05 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    9 8j6z:B (2.79) BS06 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    10 8j6z:B (2.79) BS07 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    11 8j6z:B (2.79) BS08 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    12 8j6z:B (2.79) BS09 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    13 8j6z:B (2.79) BS10 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    14 8j6z:B (2.79) BS11 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    15 8j6z:B (2.79) BS12 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    16 8j6z:B (2.79) BS13 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    17 8j6z:B (2.79) BS14 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    18 8j6z:B (2.79) BS15 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    19 8j6z:B (2.79) BS16 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    20 8j6z:B (2.79) BS17 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    21 8j6z:B (2.79) BS18 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    22 8j6z:B (2.79) BS19 PQN 1.97.1.12 GO:0000287 ... P56767 37936349
    23 8j6z:B (2.79) BS20 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    24 8j6z:B (2.79) BS21 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    25 8j6z:B (2.79) BS22 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    26 8j6z:B (2.79) BS23 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    27 8j6z:B (2.79) BS24 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    28 8j6z:B (2.79) BS25 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    29 8j6z:B (2.79) BS26 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    30 8j6z:B (2.79) BS27 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    31 8j6z:B (2.79) BS28 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    32 8j6z:B (2.79) BS29 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    33 8j6z:B (2.79) BS30 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    34 8j6z:B (2.79) BS31 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    35 8j6z:B (2.79) BS32 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    36 8j6z:B (2.79) BS33 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    37 8j6z:B (2.79) BS34 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    38 8j6z:B (2.79) BS35 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    39 8j6z:B (2.79) BS36 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    40 8j6z:B (2.79) BS37 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    41 8j6z:B (2.79) BS38 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    42 8j6z:B (2.79) BS39 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    43 8j6z:B (2.79) BS40 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    44 8j6z:B (2.79) BS41 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    45 8j6z:B (2.79) BS42 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    46 8j6z:B (2.79) BS43 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    47 8j6z:B (2.79) BS44 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    48 8j6z:B (2.79) BS45 CLA 1.97.1.12 GO:0000287 ... P56767 37936349
    49 8j6z:F (2.79) BS01 CLA ? GO:0003729 ... Q9SHE8 37936349
    50 8j6z:G (2.79) BS01 CLA ? GO:0005515 ... Q9S7N7 37936349
    51 8j6z:G (2.79) BS02 CLA ? GO:0005515 ... Q9S7N7 37936349
    52 8j6z:I (2.79) BS01 CLA ? GO:0003674 ... P56768 37936349
    53 8j6z:L (2.79) BS03 CLA ? GO:0003729 ... Q9SUI4 37936349
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218