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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bcv:A (2.2) BS41 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    2 8bcv:B (2.2) BS01 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    3 8bcv:B (2.2) BS02 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    4 8bcv:B (2.2) BS03 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    5 8bcv:B (2.2) BS04 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    6 8bcv:B (2.2) BS05 SF4 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    7 8bcv:B (2.2) BS06 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    8 8bcv:B (2.2) BS07 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    9 8bcv:B (2.2) BS08 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    10 8bcv:B (2.2) BS09 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    11 8bcv:B (2.2) BS10 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    12 8bcv:B (2.2) BS11 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    13 8bcv:B (2.2) BS12 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    14 8bcv:B (2.2) BS13 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    15 8bcv:B (2.2) BS14 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    16 8bcv:B (2.2) BS15 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    17 8bcv:B (2.2) BS16 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    18 8bcv:B (2.2) BS17 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    19 8bcv:B (2.2) BS18 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    20 8bcv:B (2.2) BS19 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    21 8bcv:B (2.2) BS20 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    22 8bcv:B (2.2) BS21 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    23 8bcv:B (2.2) BS22 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    24 8bcv:B (2.2) BS23 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    25 8bcv:B (2.2) BS24 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    26 8bcv:B (2.2) BS25 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    27 8bcv:B (2.2) BS26 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    28 8bcv:B (2.2) BS27 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    29 8bcv:B (2.2) BS28 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    30 8bcv:B (2.2) BS29 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    31 8bcv:B (2.2) BS30 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    32 8bcv:B (2.2) BS31 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    33 8bcv:B (2.2) BS32 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    34 8bcv:B (2.2) BS33 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    35 8bcv:B (2.2) BS34 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    36 8bcv:B (2.2) BS35 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    37 8bcv:B (2.2) BS36 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    38 8bcv:B (2.2) BS37 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    39 8bcv:B (2.2) BS38 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    40 8bcv:B (2.2) BS39 PQN 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    41 8bcv:B (2.2) BS40 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    42 8bcv:B (2.2) BS41 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    43 8bcv:B (2.2) BS42 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    44 8bcv:F (2.2) BS02 CLA N/A GO:0009522 ... N/A N/A
    45 8bcv:G (2.2) BS01 CLA N/A GO:0009522 ... N/A N/A
    46 8bcv:I (2.2) BS01 CLA ? GO:0009507 ... A0A3G1AZM6 N/A
    47 8bcv:J (2.2) BS03 CLA ? GO:0009507 ... A0A3G1AZP2 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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