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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7dkz:1 (2.393) BS15 CLA N/A GO:0009765 ... N/A 33788400
    2 7dkz:A (2.393) BS45 CLA 1.97.1.12 GO:0000287 ... P05310 33788400
    3 7dkz:A (2.393) BS46 CLA 1.97.1.12 GO:0000287 ... P05310 33788400
    4 7dkz:A (2.393) BS47 CLA 1.97.1.12 GO:0000287 ... P05310 33788400
    5 7dkz:A (2.393) BS48 CLA 1.97.1.12 GO:0000287 ... P05310 33788400
    6 7dkz:A (2.393) BS49 CLA 1.97.1.12 GO:0000287 ... P05310 33788400
    7 7dkz:B (2.393) BS01 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    8 7dkz:B (2.393) BS02 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    9 7dkz:B (2.393) BS03 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    10 7dkz:B (2.393) BS04 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    11 7dkz:B (2.393) BS05 SF4 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    12 7dkz:B (2.393) BS06 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    13 7dkz:B (2.393) BS07 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    14 7dkz:B (2.393) BS08 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    15 7dkz:B (2.393) BS09 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    16 7dkz:B (2.393) BS10 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    17 7dkz:B (2.393) BS11 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    18 7dkz:B (2.393) BS12 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    19 7dkz:B (2.393) BS13 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    20 7dkz:B (2.393) BS14 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    21 7dkz:B (2.393) BS15 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    22 7dkz:B (2.393) BS16 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    23 7dkz:B (2.393) BS17 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    24 7dkz:B (2.393) BS18 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    25 7dkz:B (2.393) BS19 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    26 7dkz:B (2.393) BS20 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    27 7dkz:B (2.393) BS21 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    28 7dkz:B (2.393) BS22 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    29 7dkz:B (2.393) BS23 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    30 7dkz:B (2.393) BS24 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    31 7dkz:B (2.393) BS25 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    32 7dkz:B (2.393) BS26 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    33 7dkz:B (2.393) BS27 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    34 7dkz:B (2.393) BS28 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    35 7dkz:B (2.393) BS29 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    36 7dkz:B (2.393) BS30 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    37 7dkz:B (2.393) BS31 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    38 7dkz:B (2.393) BS32 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    39 7dkz:B (2.393) BS33 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    40 7dkz:B (2.393) BS34 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    41 7dkz:B (2.393) BS35 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    42 7dkz:B (2.393) BS36 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    43 7dkz:B (2.393) BS37 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    44 7dkz:B (2.393) BS38 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    45 7dkz:B (2.393) BS39 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    46 7dkz:B (2.393) BS40 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    47 7dkz:B (2.393) BS41 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    48 7dkz:B (2.393) BS42 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    49 7dkz:B (2.393) BS43 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    50 7dkz:B (2.393) BS44 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    51 7dkz:B (2.393) BS45 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    52 7dkz:B (2.393) BS46 PQN 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    53 7dkz:B (2.393) BS47 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33788400
    54 7dkz:G (2.393) BS01 CLA N/A GO:0009522 ... N/A 33788400
    55 7dkz:G (2.393) BS02 CLA N/A GO:0009522 ... N/A 33788400
    56 7dkz:G (2.393) BS03 CLA N/A GO:0009522 ... N/A 33788400
    57 7dkz:I (2.393) BS01 CLA ? GO:0009507 ... P17227 33788400
    58 7dkz:I (2.393) BS02 CLA ? GO:0009507 ... P17227 33788400
    59 7dkz:I (2.393) BS03 CLA ? GO:0009507 ... P17227 33788400
    60 7dkz:J (2.393) BS01 CLA ? GO:0009507 ... D5MAL3 33788400
    61 7dkz:L (2.393) BS02 CLA ? GO:0009522 ... E1C9L1 33788400
    62 7dkz:L (2.393) BS03 CLA ? GO:0009522 ... E1C9L1 33788400
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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