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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6pgk:A (2.9) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    2 6pgk:A (2.9) BS47 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    3 6pgk:A (2.9) BS48 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    4 6pgk:A (2.9) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    5 6pgk:A (2.9) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    6 6pgk:B (2.9) BS01 peptide 1.97.1.12 GO:0000287 ... P0A407 31685819
    7 6pgk:B (2.9) BS02 CL0 1.97.1.12 GO:0000287 ... P0A407 31685819
    8 6pgk:B (2.9) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    9 6pgk:B (2.9) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    10 6pgk:B (2.9) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    11 6pgk:B (2.9) BS06 SF4 1.97.1.12 GO:0000287 ... P0A407 31685819
    12 6pgk:B (2.9) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    13 6pgk:B (2.9) BS08 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    14 6pgk:B (2.9) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    15 6pgk:B (2.9) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    16 6pgk:B (2.9) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    17 6pgk:B (2.9) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    18 6pgk:B (2.9) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    19 6pgk:B (2.9) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    20 6pgk:B (2.9) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    21 6pgk:B (2.9) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    22 6pgk:B (2.9) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    23 6pgk:B (2.9) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    24 6pgk:B (2.9) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    25 6pgk:B (2.9) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    26 6pgk:B (2.9) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    27 6pgk:B (2.9) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    28 6pgk:B (2.9) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    29 6pgk:B (2.9) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    30 6pgk:B (2.9) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    31 6pgk:B (2.9) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    32 6pgk:B (2.9) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    33 6pgk:B (2.9) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    34 6pgk:B (2.9) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    35 6pgk:B (2.9) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    36 6pgk:B (2.9) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    37 6pgk:B (2.9) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    38 6pgk:B (2.9) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    39 6pgk:B (2.9) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    40 6pgk:B (2.9) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    41 6pgk:B (2.9) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    42 6pgk:B (2.9) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    43 6pgk:B (2.9) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    44 6pgk:B (2.9) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    45 6pgk:B (2.9) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    46 6pgk:B (2.9) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    47 6pgk:B (2.9) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    48 6pgk:B (2.9) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    49 6pgk:B (2.9) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    50 6pgk:B (2.9) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    51 6pgk:B (2.9) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    52 6pgk:B (2.9) BS47 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    53 6pgk:B (2.9) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    54 6pgk:B (2.9) BS49 PQN 1.97.1.12 GO:0000287 ... P0A407 31685819
    55 6pgk:B (2.9) BS50 CLA 1.97.1.12 GO:0000287 ... P0A407 31685819
    56 6pgk:F (2.9) BS02 CLA ? GO:0009522 ... P0A401 31685819
    57 6pgk:F (2.9) BS03 CLA ? GO:0009522 ... P0A401 31685819
    58 6pgk:I (2.9) BS01 CLA ? GO:0009522 ... P0A427 31685819
    59 6pgk:I (2.9) BS02 CLA ? GO:0009522 ... P0A427 31685819
    60 6pgk:I (2.9) BS03 CLA ? GO:0009522 ... P0A427 31685819
    61 6pgk:I (2.9) BS04 CLA ? GO:0009522 ... P0A427 31685819
    62 6pgk:J (2.9) BS02 CLA ? GO:0009522 ... P0A429 31685819
    63 6pgk:M (2.9) BS01 CLA ? GO:0009522 ... P0A403 31685819
    64 6pgk:M (2.9) BS02 CLA ? GO:0009522 ... P0A403 31685819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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