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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6kad:B (3.4) BS01 CLA ? GO:0009507 ... P37255 31768031
    2 6kad:B (3.4) BS02 CLA ? GO:0009507 ... P37255 31768031
    3 6kad:B (3.4) BS03 CLA ? GO:0009507 ... P37255 31768031
    4 6kad:B (3.4) BS04 CLA ? GO:0009507 ... P37255 31768031
    5 6kad:B (3.4) BS05 CLA ? GO:0009507 ... P37255 31768031
    6 6kad:B (3.4) BS06 CLA ? GO:0009507 ... P37255 31768031
    7 6kad:B (3.4) BS07 CLA ? GO:0009507 ... P37255 31768031
    8 6kad:B (3.4) BS08 CLA ? GO:0009507 ... P37255 31768031
    9 6kad:B (3.4) BS09 CLA ? GO:0009507 ... P37255 31768031
    10 6kad:B (3.4) BS10 CLA ? GO:0009507 ... P37255 31768031
    11 6kad:B (3.4) BS11 CLA ? GO:0009507 ... P37255 31768031
    12 6kad:B (3.4) BS12 CLA ? GO:0009507 ... P37255 31768031
    13 6kad:B (3.4) BS13 CLA ? GO:0009507 ... P37255 31768031
    14 6kad:B (3.4) BS14 CLA ? GO:0009507 ... P37255 31768031
    15 6kad:B (3.4) BS15 CLA ? GO:0009507 ... P37255 31768031
    16 6kad:B (3.4) BS16 CLA ? GO:0009507 ... P37255 31768031
    17 6kad:B (3.4) BS17 CLA ? GO:0009507 ... P37255 31768031
    18 6kad:B (3.4) BS18 CLA ? GO:0009507 ... P37255 31768031
    19 6kad:D (3.4) BS05 CLA 1.10.3.9 GO:0005506 ... P06007 31768031
    20 6kad:H (3.4) BS01 CLA ? GO:0009507 ... P22666 31768031
    21 6kad:H (3.4) BS02 CLA ? GO:0009507 ... P22666 31768031
    22 6kad:H (3.4) BS03 CLA ? GO:0009507 ... P22666 31768031
    23 6kad:M (3.4) BS01 CLA ? GO:0005737 ... P92277 31768031
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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