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BioLiP
Download all results in tab-seperated text for 59 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4l6v:A (3.8) BS47 CLA 1.97.1.12 GO:0000287 ... P29254 24473073
    2 4l6v:A (3.8) BS48 CLA 1.97.1.12 GO:0000287 ... P29254 24473073
    3 4l6v:A (3.8) BS49 CLA 1.97.1.12 GO:0000287 ... P29254 24473073
    4 4l6v:A (3.8) BS50 CLA 1.97.1.12 GO:0000287 ... P29254 24473073
    5 4l6v:A (3.8) BS51 CLA 1.97.1.12 GO:0000287 ... P29254 24473073
    6 4l6v:B (3.8) BS01 SF4 1.97.1.12 GO:0000287 ... P29255 24473073
    7 4l6v:B (3.8) BS02 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    8 4l6v:B (3.8) BS03 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    9 4l6v:B (3.8) BS04 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    10 4l6v:B (3.8) BS05 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    11 4l6v:B (3.8) BS06 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    12 4l6v:B (3.8) BS07 PQN 1.97.1.12 GO:0000287 ... P29255 24473073
    13 4l6v:B (3.8) BS08 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    14 4l6v:B (3.8) BS09 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    15 4l6v:B (3.8) BS10 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    16 4l6v:B (3.8) BS11 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    17 4l6v:B (3.8) BS12 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    18 4l6v:B (3.8) BS13 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    19 4l6v:B (3.8) BS14 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    20 4l6v:B (3.8) BS15 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    21 4l6v:B (3.8) BS16 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    22 4l6v:B (3.8) BS17 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    23 4l6v:B (3.8) BS18 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    24 4l6v:B (3.8) BS19 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    25 4l6v:B (3.8) BS20 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    26 4l6v:B (3.8) BS21 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    27 4l6v:B (3.8) BS22 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    28 4l6v:B (3.8) BS23 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    29 4l6v:B (3.8) BS24 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    30 4l6v:B (3.8) BS25 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    31 4l6v:B (3.8) BS26 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    32 4l6v:B (3.8) BS27 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    33 4l6v:B (3.8) BS28 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    34 4l6v:B (3.8) BS29 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    35 4l6v:B (3.8) BS30 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    36 4l6v:B (3.8) BS31 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    37 4l6v:B (3.8) BS32 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    38 4l6v:B (3.8) BS33 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    39 4l6v:B (3.8) BS34 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    40 4l6v:B (3.8) BS35 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    41 4l6v:B (3.8) BS36 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    42 4l6v:B (3.8) BS37 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    43 4l6v:B (3.8) BS38 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    44 4l6v:B (3.8) BS39 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    45 4l6v:B (3.8) BS40 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    46 4l6v:B (3.8) BS41 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    47 4l6v:B (3.8) BS42 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    48 4l6v:B (3.8) BS43 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    49 4l6v:B (3.8) BS44 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    50 4l6v:B (3.8) BS45 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    51 4l6v:B (3.8) BS46 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    52 4l6v:B (3.8) BS47 CLA 1.97.1.12 GO:0000287 ... P29255 24473073
    53 4l6v:F (3.8) BS01 CLA 1.97.1.12 GO:0009522 ... P29256
    Q55329    		 24473073
    54 4l6v:I (3.8) BS01 CLA 1.97.1.12 GO:0009522 ... Q55330 24473073
    55 4l6v:I (3.8) BS02 CLA 1.97.1.12 GO:0009522 ... Q55330 24473073
    56 4l6v:I (3.8) BS03 CLA 1.97.1.12 GO:0009522 ... Q55330 24473073
    57 4l6v:L (3.8) BS04 CLA 1.97.1.12 GO:0005886 ... P37277 24473073
    58 4l6v:M (3.8) BS01 CLA 1.97.1.12 GO:0009522 ... P72986 24473073
    59 4l6v:M (3.8) BS02 CLA 1.97.1.12 GO:0009522 ... P72986 24473073
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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