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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4fe1:A (4.9228) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2 4fe1:A (4.9228) BS47 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    3 4fe1:A (4.9228) BS48 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    4 4fe1:A (4.9228) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    5 4fe1:A (4.9228) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    6 4fe1:B (4.9228) BS01 peptide 1.97.1.12 GO:0000287 ... P0A407 22681901
    7 4fe1:B (4.9228) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    8 4fe1:B (4.9228) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    9 4fe1:B (4.9228) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    10 4fe1:B (4.9228) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    11 4fe1:B (4.9228) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    12 4fe1:B (4.9228) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    13 4fe1:B (4.9228) BS08 SF4 1.97.1.12 GO:0000287 ... P0A407 22681901
    14 4fe1:B (4.9228) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    15 4fe1:B (4.9228) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    16 4fe1:B (4.9228) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    17 4fe1:B (4.9228) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    18 4fe1:B (4.9228) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    19 4fe1:B (4.9228) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    20 4fe1:B (4.9228) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    21 4fe1:B (4.9228) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    22 4fe1:B (4.9228) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    23 4fe1:B (4.9228) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    24 4fe1:B (4.9228) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    25 4fe1:B (4.9228) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    26 4fe1:B (4.9228) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    27 4fe1:B (4.9228) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    28 4fe1:B (4.9228) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    29 4fe1:B (4.9228) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    30 4fe1:B (4.9228) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    31 4fe1:B (4.9228) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    32 4fe1:B (4.9228) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    33 4fe1:B (4.9228) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    34 4fe1:B (4.9228) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    35 4fe1:B (4.9228) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    36 4fe1:B (4.9228) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    37 4fe1:B (4.9228) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    38 4fe1:B (4.9228) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    39 4fe1:B (4.9228) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    40 4fe1:B (4.9228) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    41 4fe1:B (4.9228) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    42 4fe1:B (4.9228) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    43 4fe1:B (4.9228) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    44 4fe1:B (4.9228) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    45 4fe1:B (4.9228) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    46 4fe1:B (4.9228) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    47 4fe1:B (4.9228) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    48 4fe1:B (4.9228) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    49 4fe1:B (4.9228) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    50 4fe1:B (4.9228) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    51 4fe1:B (4.9228) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    52 4fe1:B (4.9228) BS47 PQN 1.97.1.12 GO:0000287 ... P0A407 22681901
    53 4fe1:B (4.9228) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    54 4fe1:F (4.9228) BS02 CLA ? GO:0009522 ... P0A401 22681901
    55 4fe1:F (4.9228) BS03 CLA ? GO:0009522 ... P0A401 22681901
    56 4fe1:F (4.9228) BS04 CLA ? GO:0009522 ... P0A401 22681901
    57 4fe1:F (4.9228) BS05 CLA ? GO:0009522 ... P0A401 22681901
    58 4fe1:I (4.9228) BS01 CLA ? GO:0009522 ... P0A427 22681901
    59 4fe1:I (4.9228) BS02 CLA ? GO:0009522 ... P0A427 22681901
    60 4fe1:J (4.9228) BS02 CLA ? GO:0009522 ... P0A429 22681901
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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