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BioLiP
Download all results in tab-seperated text for 5 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7y41:F
    (4.1)    		 BS02 >7y41:B (identical to 6dzi:B, 6dzp:B, 8fr8:B, 8kab:B, 5o60:B, 5o61:B, 7s0s:i, 8v9j:B, 8v9k:B, 8v9l:B, 8wi7:B, 8wi8:B, 7xam:B, 8xz3:B)
    guuacggcgguccauagcggcagggaaacgcccggucccaucccgaaccc
ggaagcuaagccugccagcgccgaugauacuacccauccggguggaaaag
uaggacaccgccgaacac
<<<.<<<<<<<.....<<<<<<<<.....<<<<<...............>
>>..>>....>>>>>>.>>.<<.......<<<<<<....>>>>>>.....
..>>..>>>>>>>>>>..
    		 ? GO:0000049 ... A0QSG1 37709237
    2 7y41:P
    (4.1)    		 BS02 >7y41:B (identical to 6dzi:B, 6dzp:B, 8fr8:B, 8kab:B, 5o60:B, 5o61:B, 7s0s:i, 8v9j:B, 8v9k:B, 8v9l:B, 8wi7:B, 8wi8:B, 7xam:B, 8xz3:B)
    guuacggcgguccauagcggcagggaaacgcccggucccaucccgaaccc
ggaagcuaagccugccagcgccgaugauacuacccauccggguggaaaag
uaggacaccgccgaacac
<<<.<<<<<<<.....<<<<<<<<.....<<<<<...............>
>>..>>....>>>>>>.>>.<<.......<<<<<<....>>>>>>.....
..>>..>>>>>>>>>>..
    		 ? GO:0003735 ... A0QSG5 37709237
    3 7y41:W
    (4.1)    		 BS02 >7y41:B (identical to 6dzi:B, 6dzp:B, 8fr8:B, 8kab:B, 5o60:B, 5o61:B, 7s0s:i, 8v9j:B, 8v9k:B, 8v9l:B, 8wi7:B, 8wi8:B, 7xam:B, 8xz3:B)
    guuacggcgguccauagcggcagggaaacgcccggucccaucccgaaccc
ggaagcuaagccugccagcgccgaugauacuacccauccggguggaaaag
uaggacaccgccgaacac
<<<.<<<<<<<.....<<<<<<<<.....<<<<<...............>
>>..>>....>>>>>>.>>.<<.......<<<<<<....>>>>>>.....
..>>..>>>>>>>>>>..
    		 ? GO:0003723 ... A0R3D2 37709237
    4 7y41:a
    (4.1)    		 BS02 >7y41:B (identical to 6dzi:B, 6dzp:B, 8fr8:B, 8kab:B, 5o60:B, 5o61:B, 7s0s:i, 8v9j:B, 8v9k:B, 8v9l:B, 8wi7:B, 8wi8:B, 7xam:B, 8xz3:B)
    guuacggcgguccauagcggcagggaaacgcccggucccaucccgaaccc
ggaagcuaagccugccagcgccgaugauacuacccauccggguggaaaag
uaggacaccgccgaacac
<<<.<<<<<<<.....<<<<<<<<.....<<<<<...............>
>>..>>....>>>>>>.>>.<<.......<<<<<<....>>>>>>.....
..>>..>>>>>>>>>>..
    		 ? GO:0003735 ... A0QSG7 37709237
    5 7y41:g
    (4.1)    		 BS01 >7y41:B (identical to 6dzi:B, 6dzp:B, 8fr8:B, 8kab:B, 5o60:B, 5o61:B, 7s0s:i, 8v9j:B, 8v9k:B, 8v9l:B, 8wi7:B, 8wi8:B, 7xam:B, 8xz3:B)
    guuacggcgguccauagcggcagggaaacgcccggucccaucccgaaccc
ggaagcuaagccugccagcgccgaugauacuacccauccggguggaaaag
uaggacaccgccgaacac
<<<.<<<<<<<.....<<<<<<<<.....<<<<<...............>
>>..>>....>>>>>>.>>.<<.......<<<<<<....>>>>>>.....
..>>..>>>>>>>>>>..
    		 ? GO:0003735 ... A0R215 37709237
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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