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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6s12:F
    (3.2)    		 BS02 >6s12:B (identical to 7asm:B, 6fxc:AB, 6fxc:BB, 6hma:B, 5ngm:AB, 6s0x:B, 6s13:B, 8y36:B, 8y37:B, 8y38:B, 8y39:B, 6yef:B)
    ucuggugacuauagcaaggaggucacaccuguucccaugccgaacacaga
aguuaagcuccuuagcgucgaugguagucgaacuuacguuccgcuagagu
agaacguugccaggc
.<<<<..<.....<.<<<<<<.......<<<...............>>>.
.......>>>>>>..>.<<......<<<.<<<<....>>>>.>>>.....
.>>...>..>>>>..
    		 ? GO:0000049 ... W8TUC3 31391518
    2 6s12:K
    (3.2)    		 BS02 >6s12:B (identical to 7asm:B, 6fxc:AB, 6fxc:BB, 6hma:B, 5ngm:AB, 6s0x:B, 6s13:B, 8y36:B, 8y37:B, 8y38:B, 8y39:B, 6yef:B)
    ucuggugacuauagcaaggaggucacaccuguucccaugccgaacacaga
aguuaagcuccuuagcgucgaugguagucgaacuuacguuccgcuagagu
agaacguugccaggc
.<<<<..<.....<.<<<<<<.......<<<...............>>>.
.......>>>>>>..>.<<......<<<.<<<<....>>>>.>>>.....
.>>...>..>>>>..
    		 ? GO:0000049 ... A0A077V4G0 31391518
    3 6s12:M
    (3.2)    		 BS02 >6s12:B (identical to 7asm:B, 6fxc:AB, 6fxc:BB, 6hma:B, 5ngm:AB, 6s0x:B, 6s13:B, 8y36:B, 8y37:B, 8y38:B, 8y39:B, 6yef:B)
    ucuggugacuauagcaaggaggucacaccuguucccaugccgaacacaga
aguuaagcuccuuagcgucgaugguagucgaacuuacguuccgcuagagu
agaacguugccaggc
.<<<<..<.....<.<<<<<<.......<<<...............>>>.
.......>>>>>>..>.<<......<<<.<<<<....>>>>.>>>.....
.>>...>..>>>>..
    		 ? GO:0003735 ... W8TRE0 31391518
    4 6s12:T
    (3.2)    		 BS01 >6s12:B (identical to 7asm:B, 6fxc:AB, 6fxc:BB, 6hma:B, 5ngm:AB, 6s0x:B, 6s13:B, 8y36:B, 8y37:B, 8y38:B, 8y39:B, 6yef:B)
    ucuggugacuauagcaaggaggucacaccuguucccaugccgaacacaga
aguuaagcuccuuagcgucgaugguagucgaacuuacguuccgcuagagu
agaacguugccaggc
.<<<<..<.....<.<<<<<<.......<<<...............>>>.
.......>>>>>>..>.<<......<<<.<<<<....>>>>.>>>.....
.>>...>..>>>>..
    		 ? GO:0003735 ... A0A133Q8Z9 31391518
    5 6s12:U
    (3.2)    		 BS02 >6s12:B (identical to 7asm:B, 6fxc:AB, 6fxc:BB, 6hma:B, 5ngm:AB, 6s0x:B, 6s13:B, 8y36:B, 8y37:B, 8y38:B, 8y39:B, 6yef:B)
    ucuggugacuauagcaaggaggucacaccuguucccaugccgaacacaga
aguuaagcuccuuagcgucgaugguagucgaacuuacguuccgcuagagu
agaacguugccaggc
.<<<<..<.....<.<<<<<<.......<<<...............>>>.
.......>>>>>>..>.<<......<<<.<<<<....>>>>.>>>.....
.>>...>..>>>>..
    		 ? GO:0003735 ... A0A077ULC5 31391518
    6 6s12:Y
    (3.2)    		 BS01 >6s12:B (identical to 7asm:B, 6fxc:AB, 6fxc:BB, 6hma:B, 5ngm:AB, 6s0x:B, 6s13:B, 8y36:B, 8y37:B, 8y38:B, 8y39:B, 6yef:B)
    ucuggugacuauagcaaggaggucacaccuguucccaugccgaacacaga
aguuaagcuccuuagcgucgaugguagucgaacuuacguuccgcuagagu
agaacguugccaggc
.<<<<..<.....<.<<<<<<.......<<<...............>>>.
.......>>>>>>..>.<<......<<<.<<<<....>>>>.>>>.....
.>>...>..>>>>..
    		 ? GO:0003735 ... A0A380EL30 31391518
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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