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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 4m8h:A
    (2.2)    		 BS01 >4m8h:B (identical to 3a9e:I, 5ec9:B, 3erd:D, 4k4j:B, 4k6i:B, 6lb5:D, 6lit:E, 4m8e:B, 5mk4:D, 1mv9:B, 1mvc:B, 1mzn:B, 1mzn:D, 1mzn:F, 1mzn:H, 7nel:D, 7nfb:D, 4nqa:K, 3oap:B, 3ozj:D, 2p15:D, 7pdt:U, 4poh:B, 4poj:B, 4pp3:B, 4pp5:B, 3q95:C, 2qa6:D, 2qab:C, 2qgw:C, 2qr9:D, 2qse:D, 4rfw:G, 4rmc:B, 4rmd:B, 4rme:B, 5tmt:D, 5tn3:C, 5u2d:D, 4zn7:D, 4zsh:B, 2zxz:B, 2zy0:D)
    KHKILHRLLQD
    		 ? GO:0003677 ... P19793 24359708
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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