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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v8k:AA (3.006) BS01 MQ8 ? GO:0005515 ... D2Z0P2 24670637
    2 4v8k:AL (3.006) BS05 BCL ? GO:0005515 ... D2Z0P3 24670637
    3 4v8k:AL (3.006) BS06 BCL ? GO:0005515 ... D2Z0P3 24670637
    4 4v8k:AL (3.006) BS07 BPH ? GO:0005515 ... D2Z0P3 24670637
    5 4v8k:AL (3.006) BS08 FE ? GO:0005515 ... D2Z0P3 24670637
    6 4v8k:AL (3.006) BS09 MQ8 ? GO:0005515 ... D2Z0P3 24670637
    7 4v8k:AM (3.006) BS01 BPH ? GO:0005515 ... A8ASG6 24670637
    8 4v8k:AM (3.006) BS02 BCL ? GO:0005515 ... A8ASG6 24670637
    9 4v8k:AM (3.006) BS03 BCL ? GO:0005515 ... A8ASG6 24670637
    10 4v8k:AM (3.006) BS04 BPH ? GO:0005515 ... A8ASG6 24670637
    11 4v8k:AM (3.006) BS05 FE ? GO:0005515 ... A8ASG6 24670637
    12 4v8k:AM (3.006) BS06 MQ8 ? GO:0005515 ... A8ASG6 24670637
    13 4v8k:AM (3.006) BS07 CRT ? GO:0005515 ... A8ASG6 24670637
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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